BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0130.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc03890 [KG] COG1349 Transcriptional regulators of sugar metabo...    72   5e-13
AGc4939 [KG] COG1349 Transcriptional regulators of sugar metabol...    71   9e-13
BH0847 [KG] COG1349 Transcriptional regulators of sugar metaboli...    64   1e-10
mlr6641 Non COG                                                        60   1e-09
PA1490 [KG] COG1349 Transcriptional regulators of sugar metaboli...    59   4e-09

>SMc03890 [KG] COG1349 Transcriptional regulators of sugar metabolism Sme
           Sinorhizobium meliloti
          Length = 260

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 76/147 (51%)

Query: 1   MARHLAPDLKATVVTHSPSIAVELSNHAHIDVIIIGGKLFKHSVVAMGSGTIDEIARVRA 60
           +A+ + PDL AT++T++P IA  L     I+VI++GG L +    A+G+    +   +R 
Sbjct: 109 IAQAIGPDLSATIITNTPPIAAALMEKPGIEVILVGGPLNRAVGAAVGARAQRDAELLRP 168

Query: 61  DQYFMGVCSLHPRTGITSLDFDEAGIKRAFSRAAADTVVLASPDKLDTTSPFEIVPLAEV 120
           D   +G C      G+T+  F++A  KR  +  +   +   + DKL T +P  +V +   
Sbjct: 169 DLAILGTCGADAEAGLTAFHFEDAEFKRLIASRSRALLAAVTTDKLGTAAPHTVVAIDGA 228

Query: 121 SRIVLNRDTAAELIAPYQAQGIEITLA 147
           S +VL  D     +A + A+G  + LA
Sbjct: 229 STLVLEADAPEAEVAAFTARGANVVLA 255


>AGc4939 [KG] COG1349 Transcriptional regulators of sugar metabolism Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 266

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 78/144 (54%)

Query: 1   MARHLAPDLKATVVTHSPSIAVELSNHAHIDVIIIGGKLFKHSVVAMGSGTIDEIARVRA 60
           +AR +   L  TVVT++P+IA +L+  A ID+++IGGK+      A+ +  + ++  +R 
Sbjct: 108 IARAIPAGLNLTVVTNTPAIAADLTGRADIDLVLIGGKVDPAVGAAIDAMALRQLELMRP 167

Query: 61  DQYFMGVCSLHPRTGITSLDFDEAGIKRAFSRAAADTVVLASPDKLDTTSPFEIVPLAEV 120
           D   +GVC +   TG+++  F++A  KR    A+   +   + +KL   + F +   +  
Sbjct: 168 DLCVLGVCGVAAETGLSADVFEDAVFKRLACSASQRVIAAITTEKLGHKAAFHVHDFSPP 227

Query: 121 SRIVLNRDTAAELIAPYQAQGIEI 144
             +VL RD    L+    AQG+++
Sbjct: 228 LCLVLERDADRALVESLSAQGVDV 251


>BH0847 [KG] COG1349 Transcriptional regulators of sugar metabolism Bha
           Bacillus halodurans
          Length = 259

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 7   PDLKATVVTHSPSIAVELSNHAHIDVIIIGGKLFKHSVVAMGSGTIDEIARVRADQYFMG 66
           P+++ T+VT+S ++A  LS   H D+ ++GGKL K      G+  I+ +     D+ F+G
Sbjct: 114 PNVRCTIVTNSINLADLLSAKKHADIQLLGGKLEKKHRYLYGASVIERLRSYYVDKLFLG 173

Query: 67  VCSLHPRTGITSLDFDEAGIKRAFSRAAADTVVLASPDKLDTTSPFEIVPLAEVSRIVLN 126
           V  +    G+T    ++  +KR   + A   +VLA   K+  T  F++  L+++  ++ +
Sbjct: 174 VVGI-SEHGLTIAHEEDGMVKRTMLQQAKQKIVLADHSKIGVTDYFKLADLSDIDVLITD 232

Query: 127 RDTAAELIAPYQAQGIEITL 146
           R          Q  G+E+ +
Sbjct: 233 RSPPYSFHQLLQQYGVELVI 252


>mlr6641 Non COG
          Length = 238

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 63/117 (53%)

Query: 12  TVVTHSPSIAVELSNHAHIDVIIIGGKLFKHSVVAMGSGTIDEIARVRADQYFMGVCSLH 71
           T+ T+S  IA        + +I++GG +       + +  I  +A++  D+ F+GVCS+ 
Sbjct: 99  TLATNSIDIAGAALRGQDLKLIMLGGTVDLAVGGCVDATAIGSLAQMNIDRSFIGVCSVS 158

Query: 72  PRTGITSLDFDEAGIKRAFSRAAADTVVLASPDKLDTTSPFEIVPLAEVSRIVLNRD 128
           P  G+++ D  +A  KRA   A+  T+ LA+ DKL+  +P  +  + E+  +VL  D
Sbjct: 159 PTFGLSAFDIADATFKRALVAASGYTIALATTDKLEVRAPHRVSEINEIDCLVLEHD 215


>PA1490 [KG] COG1349 Transcriptional regulators of sugar metabolism Pae
           Pseudomonas aeruginosa
          Length = 258

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 1   MARHLAPDLKATVVTHSPSIAVELSNHAHIDVIIIGGKLFKHSVVAMGSGTIDEIARVRA 60
            AR LA     TV+T+S  IA  +    +    +IGG+    S   +G+  I++IAR  A
Sbjct: 107 FARELARQSHLTVITNSLLIAGSVGASGN-RAFMIGGEYRPESEQNVGALAIEQIARFNA 165

Query: 61  DQYFMGVCSLHPRTGITSLDF--DEAGIKRAFSRAAADTVVLASPDKLDTTSPFEIVPLA 118
           +   + V +L+   G  ++DF  +EA I RA    A    V+A   KL   + F++ PL+
Sbjct: 166 EHAVITVGALN---GDGAMDFSIEEAEIARAMIAQARQLTVIADSSKLGRRALFQVFPLS 222

Query: 119 EVSRIVLNRDTAAELIAPYQAQGIEI 144
            ++R+V++R    EL    Q   +E+
Sbjct: 223 RINRLVVDRKPTGELWEALQQARVEV 248