BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0088.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl980GM [E] COG0765 ABC-type amino acid transport system, perme... 241 1e-63 AGc2581 [E] COG0765 ABC-type amino acid transport system, permea... 223 3e-58 SMa0081 [E] COG0765 ABC-type amino acid transport system, permea... 222 6e-58 AGc2569 [E] COG0765 ABC-type amino acid transport system, permea... 197 1e-50 AGpA330 [E] COG0765 ABC-type amino acid transport system, permea... 195 5e-50 >AGl980GM [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 219 Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/215 (53%), Positives = 160/215 (74%), Gaps = 1/215 (0%) Query: 4 SFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQGI 63 +F W F +L+ ++ WT++L+ +A + G I GF + LAR S + L + YI+ IQGI Sbjct: 5 TFGWNEFGFLLTALQWTVLLTIIALVGGGIVGFFIALARTSDNKLLRIAAGTYIQVIQGI 64 Query: 64 PLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAECL 123 P+L++LF+ Y+GLS+ G LP L+AAG +M +YTS YL +IWRGC++A+P+ QWEA+E L Sbjct: 65 PVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASESL 124 Query: 124 SLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIFQP 183 +LTR Q R VI+PQA R+SLPPTVGF VQV+K TS+AS+IGF+EL RAGQ+INN+ FQP Sbjct: 125 ALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATFQP 184 Query: 184 FLIFSLVGAFYFVLCYPLSRWSESMENKLNV-SNR 217 F +F V YF++CYPLS+ S +E +L+ SNR Sbjct: 185 FRVFVAVAVLYFIVCYPLSQLSRWLERRLHAGSNR 219 >AGc2581 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 217 Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 105/213 (49%), Positives = 157/213 (73%) Query: 2 IGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQ 61 + +F W FL+L++ W++VL+ +AF +GS+ G + R+S + YI IQ Sbjct: 1 MSTFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQ 60 Query: 62 GIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAE 121 IP+L++LF+ Y+GL+++GF +P L+AA +++ VY SAYL +IWRG ++A+P+PQWEA+ Sbjct: 61 SIPVLMILFMSYYGLTLFGFEIPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASA 120 Query: 122 CLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIF 181 L+LTR+Q R VI+PQA RLSLPPTVGFLVQ++K TS+ SV+GF+EL+RAGQ++NN+ F Sbjct: 121 SLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIVSVVGFVELSRAGQLVNNATF 180 Query: 182 QPFLIFSLVGAFYFVLCYPLSRWSESMENKLNV 214 +PF +F +V YF +C+PLSR S +E L+V Sbjct: 181 RPFQVFFVVALLYFAICFPLSRLSRHLERVLHV 213 >SMa0081 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 218 Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 109/213 (51%), Positives = 153/213 (71%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 MI +F W FL +V + WT+ LS +AF GS+GG V L R+S R L + +I Sbjct: 1 MIRAFGWNEFLVIVAAAQWTIALSAIAFAGGSVGGLLVALMRVSETRALRLFATGFIRVF 60 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QG PLL+ LF+V+FG++++GFA+ +AA +A+ ++ SA+LG+IWRGC+EA+P+ Q EAA Sbjct: 61 QGTPLLMQLFLVFFGMNIFGFAINPWIAATIALALHASAFLGEIWRGCIEAVPKGQREAA 120 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 L L ++++R VI+PQA R+++ PTVGFLVQ+IK TSLAS+IGF ELTR GQIINN+ Sbjct: 121 TALGLRYFRSMRHVILPQAARIAVAPTVGFLVQLIKGTSLASIIGFTELTRQGQIINNAT 180 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLN 213 F PFL+F V A YF+LC+PLS + ME + + Sbjct: 181 FSPFLVFGTVAAVYFLLCWPLSLIARRMETRFS 213 >AGc2569 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 219 Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/217 (44%), Positives = 152/217 (70%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 MI +W L+ + WT++LS ++F G + ++ RIS ++ + + Y+E Sbjct: 1 MIEFSTWDILRNLLLATRWTVLLSLVSFAGGGLVALLLLFMRISRKKSMRVFARYYVELF 60 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QG PLL+ LFI +FGL + G +PA +AAGL ++++ +A+L +IWRGCVE++ + QWEA+ Sbjct: 61 QGTPLLMQLFIAFFGLGLVGIDVPAWLAAGLTLILWAAAFLTEIWRGCVESVAKGQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 L++ R Q +R VI+PQA R+++PPTVGF VQVIK T++ S+IGF+EL++AG ++ N+ Sbjct: 121 ASLAMGRLQQMRYVILPQAMRVAIPPTVGFFVQVIKGTAVTSIIGFVELSKAGTVVTNAT 180 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 FQPF ++ LV YF LC+PLS+ S+ +E KLNV++R Sbjct: 181 FQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHR 217 >AGpA330 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 216 Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 99/211 (46%), Positives = 140/211 (66%), Gaps = 1/211 (0%) Query: 4 SFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQGI 63 FS+ L+L ++ WT +++ +A G G + +AR S L + ++E IQGI Sbjct: 3 QFSFSDLLFLATALEWTFLMAAIALAFGVPLGLALAIARTSGSTVLRVIASAFVELIQGI 62 Query: 64 PLLILLFIVYFGLSVY-GFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAEC 122 PLL LL YFG+ V G +P +VA G A +YT+ +LGDIWRG ++A+ + QWEA C Sbjct: 63 PLLGLLMFFYFGIPVLAGKDVPTVVAVGAAYTIYTAVFLGDIWRGGIQAVRQAQWEAGAC 122 Query: 123 LSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIFQ 182 L L+ Q +I PQAFR++LP TVGFLVQ+IK TSLASV+G +EL RAGQ+I+ FQ Sbjct: 123 LGLSWLQQFVHIIGPQAFRIALPATVGFLVQLIKNTSLASVVGLVELARAGQMISAGTFQ 182 Query: 183 PFLIFSLVGAFYFVLCYPLSRWSESMENKLN 213 P L+++LV A YF +C+PL+ WS ++E +LN Sbjct: 183 PLLVYTLVAAIYFTICFPLTTWSRTLEARLN 213