BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0055.p (381 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2378 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, l... 378 e-104 PA1880 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, l... 182 1e-45 SMb20342 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase,... 162 1e-39 CC2269 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, l... 159 1e-38 RSc0627 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, ... 157 5e-38 >PA2378 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Pae Pseudomonas aeruginosa Length = 771 Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust. Identities = 173/271 (63%), Positives = 214/271 (78%) Query: 109 AKGEAPFELAMSAVNIPYAIPNIRVEAPEVEAHTRIGWFRSVSNIPHAFAVQSFSAELAA 168 +K + FEL M N+P+AIPN+R+E PE AHTR+GWFRSVSNIPHAFA+QSF ELAA Sbjct: 496 SKHQGAFELGMGLTNLPFAIPNVRLENPEAPAHTRVGWFRSVSNIPHAFAIQSFVGELAA 555 Query: 169 AAKRDHRDYLLELIGPARKINPSEMADGWNYGESPERYPLDTGRMRGVIELATSKAGWGR 228 A +D +DYLL+L+GPAR+I+ +E+ D WNYGESPERYPLD GR+RGVIE A ++GWG Sbjct: 556 KAGQDPKDYLLKLLGPARRIDTAELGDSWNYGESPERYPLDVGRLRGVIEEAARQSGWGG 615 Query: 229 KLPKGRGLGLAVCYSFVTYIAAVVEVEVNDEGEVSIPRVDIAVDCGPSINPDRIRSQVEG 288 +LP+GR G+A YSFVTY+A V+EVEV D+G + + + IA DCGP INP+RIRSQ+EG Sbjct: 616 ELPRGRARGIAAHYSFVTYVAVVIEVEVKDDGALLVHKATIAADCGPQINPERIRSQLEG 675 Query: 289 ACIMGISLAMTGEISFKNGAVEQSNFHDYEVLRAFAAPAKIDVHIVPHTLDVPLGGVGEP 348 AC+MG+ LA GEISFK+G V+Q NFH YE+ R AP + VH++ D+PLGGVGEP Sbjct: 676 ACVMGLGLAALGEISFKDGKVQQDNFHQYELARMPLAPKAVSVHLLKPDGDLPLGGVGEP 735 Query: 349 ATPTIAPALCNAIFAATGKRIRQLPIREQLK 379 P IAPALCNAIFAATGKRIR+LPIR QL+ Sbjct: 736 GVPPIAPALCNAIFAATGKRIRELPIRNQLQ 766 Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 76/149 (51%), Positives = 102/149 (68%), Gaps = 7/149 (4%) Query: 1 MVYAVIARPPVYGGKLAKVDSSEALKVPGVIRVVELKGSPPPALFNPLGGVAVIARNTWA 60 M+YAV+ARPPVYGGKL + D++ ALKVPGV++V+E++G P P+ F PLGGVAV+A+NTWA Sbjct: 237 MLYAVVARPPVYGGKLKRYDAAAALKVPGVVKVIEIEGRPIPSEFQPLGGVAVVAQNTWA 296 Query: 61 AIKGREALKLTWDNGPNASYDSAEFRKTMEAAARQPAKAVRNAGGPAGAKGEAPFELAMS 120 AIKGREAL + WD G N YDS +RK +E AAR+P K VR++G A A F Sbjct: 297 AIKGREALVVEWDAGVNGGYDSVAYRKQLEEAARKPGKVVRDSGDAA-----ALFAKGGD 351 Query: 121 AVNIPYAIPNIRVEAPEVEAHTRIGWFRS 149 V Y +P++ +AP +E W++ Sbjct: 352 IVEAEYYLPHL-AQAP-MEPPVSTAWYKD 378 >PA1880 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Pae Pseudomonas aeruginosa Length = 731 Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/263 (41%), Positives = 149/263 (56%), Gaps = 30/263 (11%) Query: 121 AVNIPYAIPNIRVEAPEVEAHTRIGWFRSVSNIPHAFAVQSFSAELAAAAKRDHRDYLLE 180 A N+PYA+PN+ VE + + W+R V + +AV++F E A AA +D + + Sbjct: 497 AANLPYAVPNVSVELSTTQVGVPVLWWRVVGSSHTVYAVEAFIDEAAQAAGKDPYLFRRD 556 Query: 181 LIGPARKINPSEMADGWNYGESPERYPLDTGRMRGVIELATSKAGW--GRKLPKGRGLGL 238 L+ E P R+RGV+ELA KAGW R LP GRG G+ Sbjct: 557 LLA-----------------EQP--------RLRGVLELAAEKAGWDPSRPLPAGRGRGI 591 Query: 239 AVCYSFVTYIAAVVEVEVNDEGEVSIPRVDIAVDCGPSINPDRIRSQVEGACIMGISLAM 298 AV +F T++A VVEV V+ +G++ + RV AVDCG INPD I +Q+EG G+ + Sbjct: 592 AVTEAFKTFVAQVVEVSVDKDGKLKVERVVCAVDCGIPINPDVIAAQMEGGIGFGLGAIL 651 Query: 299 TGEISFKNGAVEQSNFHDYEVLRAFAAPAKIDVHIVPHTLDVPLGGVGEPATPTIAPALC 358 I+ K+G VEQ+NF Y+VLR P K++VHIVP + + P GVGEP I PAL Sbjct: 652 HSAITLKDGKVEQNNFDGYQVLRIAEMP-KVEVHIVP-SGEAPT-GVGEPGVAPIGPALA 708 Query: 359 NAIFAATGKRIRQLPIREQLKKA 381 NAIFAATG+R+ LP KA Sbjct: 709 NAIFAATGQRLYNLPFPTSFAKA 731 Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 19/124 (15%) Query: 1 MVYAVIARPPVYGGKLAKVDSSEALKVPGVIRVVELKGSPPPALFNPLGGVAVIARNTWA 60 M+ A++ RPP++G + D++ +PGV+ VV++ GVAV+A+ WA Sbjct: 230 MLVALLQRPPLFGATVKSFDATATRAIPGVVEVVQVPH-----------GVAVVAKGFWA 278 Query: 61 AIKGREALKLTWDNGPNASYDS----AEFRKTMEAAARQPAKAVRNAGGPAGAKGEAPFE 116 A +GR+ALK+ WD S AE+RK E QP K R G A A A Sbjct: 279 AKQGRDALKVEWDESKAEKRGSEALMAEYRKLAE----QPGKPARRDGDAAKAVAGATRR 334 Query: 117 LAMS 120 +A S Sbjct: 335 IAAS 338 >SMb20342 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Sme Sinorhizobium meliloti Length = 737 Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 139/259 (53%), Gaps = 29/259 (11%) Query: 121 AVNIPYAIPNIRVEAPEVEAHTRIGWFRSVSNIPHAFAVQSFSAELAAAAKRDHRDYLLE 180 A N+PYAI N V + + W+RSV + AFA ++F E+A AA RD ++ L Sbjct: 507 ANNLPYAIANQTVGLTTTDVRVPVLWWRSVGSTHTAFAAEAFLDEVAEAAGRDPLEFRLS 566 Query: 181 LIGPARKINPSEMADGWNYGESPERYPLDTGRMRGVIELATSKAGWGRKLPKGRGLGLAV 240 ++ P R V++LA KA W + LP+GR G+AV Sbjct: 567 MLEP-------------------------DSRHATVLKLAAEKAEWQKPLPEGRFRGVAV 601 Query: 241 CYSFVTYIAAVVEVEVNDEGEVSIPRVDIAVDCGPSINPDRIRSQVEGACIMGISLAMTG 300 SF + +A + EV V+ +G + + RV AVDCG +INPD++R+QVEG G+S + Sbjct: 602 AESFGSVVAQIAEVSVDGDG-IKVERVVAAVDCGLAINPDQVRAQVEGGIGFGLSAILGE 660 Query: 301 EISFKNGAVEQSNFHDYEVLRAFAAPAKIDVHIVPHTLDVPLGGVGEPATPTIAPALCNA 360 EI+ +G V+Q NF Y LR A P K++VHIV P G+GEP P I PA+ NA Sbjct: 661 EITLTDGKVDQGNFDMYTPLRIDAMP-KVEVHIVASA--NPPSGIGEPGVPPIGPAVANA 717 Query: 361 IFAATGKRIRQLPIREQLK 379 F A GKRIR +P + L Sbjct: 718 AFKALGKRIRVMPFAKSLN 736 >CC2269 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Ccr Caulobacter vibrioides Length = 724 Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/263 (40%), Positives = 143/263 (54%), Gaps = 17/263 (6%) Query: 118 AMSAVNIP-YAIPNIRVEAPEVEAHTRIGWFRSVSNIPHAFAVQSFSAELAAAAKRDHRD 176 AM+A P A+ N R + + G+ R+ N F +QSF+ ELA AA +D Sbjct: 476 AMNATQFPCRAVANYRHDVSVMPLGFPTGFLRAPGNNAFGFVIQSFTDELALAAGKDPVA 535 Query: 177 YLLELIGPARKINPSEMADGWNYGESPERYPLDTGRMRGVIELATSKAGWGRKLPKGRGL 236 + EL+G R + GE + TGRMRGV++L +GWGRK+PKG GL Sbjct: 536 FRRELLGEPRLL-----------GEPGKGDSFHTGRMRGVLDLVAEMSGWGRKVPKGTGL 584 Query: 237 GLAVCYSFVTYIAAVVEVEVNDEGEVSIPRVDIAVDCGPSI-NPDRIRSQVEGACIMGIS 295 G+A YS + Y+A V++V V D G V + +V A D G I NP Q++G+ + I Sbjct: 585 GVACHYSHLGYVAVVMQVTVKD-GAVKVDKVWAAADVGRQIVNPSGADQQMQGSILDAIG 643 Query: 296 LAMTGEISFKNGAVEQSNFHDYEVLRAFAAPAKIDVHIVPHTLDVPLGGVGEPATPTIAP 355 + I+F+NGA SNF D+ +LR AP V + D G+GEPA P Sbjct: 644 STLYQSITFENGAATNSNFGDFPLLRMADAPP---VEVRYKLSDNNPTGLGEPAYPPAPA 700 Query: 356 ALCNAIFAATGKRIRQLPIREQL 378 ALCNAIFAATGKRIR LPI +QL Sbjct: 701 ALCNAIFAATGKRIRSLPIGDQL 723 Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 11/149 (7%) Query: 1 MVYAVIARPPVYGGKLAKVDSSEALKVPGVIRVVELKGSPPPALFNPLGGVAVIARNTWA 60 M++A A+ PVYG K+A VD + A V GV ++G L L GVAV+A + WA Sbjct: 218 MLFAAFAKAPVYGAKVASVDLALAKAVKGVRDAFIIEGGT--NLQGLLPGVAVVADSWWA 275 Query: 61 AIKGREALKLTWDNGPNASYDSAEFRKTMEAAARQ-PAKAVRNAGGPAGAKGEAPFELAM 119 A KGREAL++ W P AS + F A P + + N G EA + A Sbjct: 276 ARKGREALQIQWAEHPTASQSTVGFAAKAAELAAAPPHRNLHNDGDV-----EAALKGAA 330 Query: 120 SAVNIPYAIPNI---RVEAPEVEAHTRIG 145 V+ Y+ P I +E AH + G Sbjct: 331 KTVSAAYSYPFIAHAALEPQNCTAHVKDG 359 >RSc0627 [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Rso Ralstonia solanacearum Length = 736 Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 112/265 (42%), Positives = 152/265 (57%), Gaps = 42/265 (15%) Query: 121 AVNIPYAIPNIRVE--APE---VEAHTRIGWFRSVSNIPHAFAVQSFSAELAAAAKRDHR 175 A N+PYAIP + V+ P V +H W+RSV + A++ ++F ELA AA +D Sbjct: 498 AANLPYAIPALHVDLHTPHDIPVPSH----WWRSVGSTHTAYSTETFIDELAIAAGQDPV 553 Query: 176 DYLLELIGPARKINPSEMADGWNYGESPERYPLDTGRMRGVIELATSKAGWGRKLPKG-- 233 + L L+ +++P R G ++LA KAGWG+ L Sbjct: 554 AFRLALL---------------------QKHP----RHAGALKLAADKAGWGQPLVPAAD 588 Query: 234 ---RGLGLAVCYSFVTYIAAVVEVEVNDEGEVSIPRVDIAVDCGPSINPDRIRSQVEGAC 290 R G+AV SF T +A V EV + +G S+ RV AVDCG +NPD +R+QVEG Sbjct: 589 GAKRARGVAVHESFGTVVAEVAEVTIKPDGSFSVDRVVCAVDCGVVVNPDVVRAQVEGGV 648 Query: 291 IMGISLAMTGEISFKNGAVEQSNFHDYEVLRAFAAPAKIDVHIVPHTLDVPLGGVGEPAT 350 +S A+ G I+FK+GAVEQSNFHDY +R P K++VHIVP + + P G+GEP Sbjct: 649 GYALSAALHGAITFKDGAVEQSNFHDYAPIRINEMP-KVEVHIVP-SAEHPT-GIGEPGV 705 Query: 351 PTIAPALCNAIFAATGKRIRQLPIR 375 P +APA+ NAI AATGKR+R LPIR Sbjct: 706 PPLAPAVANAIAAATGKRVRSLPIR 730 Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%) Query: 1 MVYAVIARPPVYGGKLAKVDSSEALKVPGVIRVVELKGSPPPALFNPLGGVAVIARNTWA 60 M+ A++A PP +G K+ +++ A V GV+ VV++ GVAV+A++TW+ Sbjct: 233 MLTAMVAHPPRFGAKVKSFNATPAKAVQGVVDVVQIPT-----------GVAVLAKDTWS 281 Query: 61 AIKGREALKLTWDNGPNASYDSAEFRKTMEAAARQPAKAVRNAGGPAGAKGEAPFELAMS 120 A KGR+AL++ WD S E A+ P R G A + P + + Sbjct: 282 ARKGRDALQVEWDESAAFKLSSDEIFARYHELAKTPGSVARKEGDVDAAFTQ-PARVLRA 340 Query: 121 AVNIPY 126 A + P+ Sbjct: 341 AYDFPF 346