BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0052.p (384 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all3275_3 [T] COG0642 Signal transduction histidine kinase Nos N... 171 2e-42 alr3092_2 [T] COG0642 Signal transduction histidine kinase Nos N... 169 7e-42 all1804_4 [T] COG0642 Signal transduction histidine kinase Nos N... 169 7e-42 RSp1178 [T] COG0642 Signal transduction histidine kinase Rso Ral... 166 1e-40 all0978_3 [T] COG0642 Signal transduction histidine kinase Nos N... 163 6e-40 >all3275_3 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 295 Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 136/237 (57%), Gaps = 2/237 (0%) Query: 1 MLGHELRNPLTPILTAVHLMRLRG--GGGMEKECSVIERQARHLVRLVDDLLDVSRVAQG 58 +L HELR PL PIL L++ R + IER A+ ++L++DLLDVSR+ QG Sbjct: 57 VLSHELRTPLNPILGWATLLKKRNLEEATRRRGIETIERNAKLQIQLIEDLLDVSRIQQG 116 Query: 59 KINLQKKKLEIADIISKAIETASPLLEERQHRLTVNVPAQGLQVHADPERLTQVLANLLT 118 K++L + + + I +A+ET +E + + + V D RL Q++ NLL Sbjct: 117 KLSLNIQSVNLVHTIEEALETVRLAIEAKSIHIKTALGVNVGMVAGDAARLQQIIWNLLA 176 Query: 119 NACKYTENRGHIRVDAMLDNNQIVVEIRDNGIGIRADMLPHVFEMFAQETQAIDRAGGGL 178 NA K+T G I+V NN ++I+DNG GI ++ LP+VFE F Q I R GGL Sbjct: 177 NAIKFTPPAGQIQVVLERVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGL 236 Query: 179 GLGLAIVRSLTELHGGTVHVFSAGPGTGSVFTIKLPAVLSDATPILLPLTPDNLLGL 235 GLGLAIV+ LTELHGGTV SAG G G++FT+ LP +L+ + PDN L Sbjct: 237 GLGLAIVKHLTELHGGTVKAESAGEGMGAIFTVNLPLMLNAPQKVPQVGQPDNTWSL 293 >alr3092_2 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 250 Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 128/218 (58%), Gaps = 2/218 (0%) Query: 1 MLGHELRNPLTPILTAVHLMRLRGGGGME--KECSVIERQARHLVRLVDDLLDVSRVAQG 58 ++ HELR+PL PIL L++ R ++ + VIER A+ RL+DDLLDVSR+ +G Sbjct: 13 IVSHELRSPLNPILGWAKLLKSRKLDALKTNQALEVIERNAKLQARLIDDLLDVSRILRG 72 Query: 59 KINLQKKKLEIADIISKAIETASPLLEERQHRLTVNVPAQGLQVHADPERLTQVLANLLT 118 K++L +++ I A+ET E + + + + +V DP RL QV+ NLLT Sbjct: 73 KLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLT 132 Query: 119 NACKYTENRGHIRVDAMLDNNQIVVEIRDNGIGIRADMLPHVFEMFAQETQAIDRAGGGL 178 NA K+T G I V + +++RD G GI D LP+VFE F Q + R GGL Sbjct: 133 NAVKFTPEGGQIEVSLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGL 192 Query: 179 GLGLAIVRSLTELHGGTVHVFSAGPGTGSVFTIKLPAV 216 GLGLAIVR L ELHGG V V S G G G+ FT+KLP + Sbjct: 193 GLGLAIVRHLVELHGGAVQVTSPGEGLGTTFTVKLPLI 230 >all1804_4 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 269 Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 108/268 (40%), Positives = 150/268 (55%), Gaps = 29/268 (10%) Query: 1 MLGHELRNPLTPILTAVHLMRLR--GGGGMEKECSVIERQARHLVRLVDDLLDVSRVAQG 58 +L HELR+PL IL L++ R K IER A+ +L++DLLD+SR+ +G Sbjct: 8 ILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERNAKAQTQLIEDLLDISRMIRG 67 Query: 59 KINLQKKKLEIADIISKAIETASPLLEERQHRLTV--------NVPAQGLQVHADPERLT 110 K+ L + + II AIE + + ++ LT N+P QV D ERL Sbjct: 68 KLRLNVRTCNLIPIIETAIENINLAAQAKEIDLTFFLENPATENLP---FQVSGDSERLQ 124 Query: 111 QVLANLLTNACKYTENRGHIRV----------DAMLDNNQIVVEIRDNGIGIRADMLPHV 160 QV+ NLLTNA K+T + G + V + ++ NN +++ D GIGI + LP+V Sbjct: 125 QVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYV 184 Query: 161 FEMFAQETQAIDRAGGGLGLGLAIVRSLTELHGGTVHVFSAGPGTGSVFTIKLPAVLSDA 220 F+ F Q +I R+ GGLGLGLAIVR L ELHGGTVHV S G GS FT+KLP + + Sbjct: 185 FDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGEEQGSTFTVKLPLLSENK 244 Query: 221 TPILLPLTP--DNLLGLQPLEEGCPILI 246 + P++P +NL L PL CP L+ Sbjct: 245 ATSIEPISPRGENLTPL-PL---CPSLL 268 >RSp1178 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 676 Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 183/359 (50%), Gaps = 24/359 (6%) Query: 2 LGHELRNPLTPILTAVHLMRLR--GGGGMEKECSVIERQARHLVRLVDDLLDVSRVAQGK 59 + HELR PL +L L+ +R + IER AR V L+DDLLD+S + GK Sbjct: 306 VSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGK 365 Query: 60 INLQKKKLEIADIISKAIETASPLLEERQHRLTVN---VPAQGLQVHADPERLTQVLANL 116 + L+ +++AD++ +A ET P+ RQ ++TV+ +P LQ D RL QV NL Sbjct: 366 VPLEIGPVDLADVLERARETIEPM--ARQKQITVDTEYLPVPLLQ--GDAGRLKQVFWNL 421 Query: 117 LTNACKYTENRGHIRVDAMLDNNQIVVEIRDNGIGIRADMLPHVFEMFAQETQAIDRAGG 176 L NA K+T GH+R+ + +V +RD GIGI LPHVF+ F Q + R G Sbjct: 422 LANAVKFTPEGGHVRITVQAGADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHG 481 Query: 177 GLGLGLAIVRSLTELHGGTVHVFSAGPGTGSVFTIKLPAVLSDATPILLPLTPDNLLGL- 235 GLGLGLAI + L ELH G + S+G G+ + LP A P P P GL Sbjct: 482 GLGLGLAIAKQLVELHHGHITAASSGADLGTTMAVTLPL---HAPPSNEP--PGRAPGLV 536 Query: 236 ----QPLEEGCPILIVDDNLDAAQILGELLTMQGHEIRIAYDGPSALDIVKDFT---PRI 288 P +G +L+VDDN ++ ++ +L G E+ G +ALD + P Sbjct: 537 TGTAAPALDGLRVLVVDDNAESLGVIALMLERYGAEVVTVASGAAALDALDRAAGGPPFD 596 Query: 289 ALL-DIGLPIMDGYEVAGHLRAMPHLEGISLIALTGYGQASDKLRSLRAGFDHHLVKPV 346 AL+ D+ +P MDG ++ +RA L + IA+T + + AG+ + KP+ Sbjct: 597 ALVSDLAMPGMDGMQLLRAIRAR-GLTALPAIAVTAFADPIRLKAAKEAGYQSVITKPI 654 >all0978_3 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 246 Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 2/216 (0%) Query: 1 MLGHELRNPLTPILTAVHLMRLR--GGGGMEKECSVIERQARHLVRLVDDLLDVSRVAQG 58 +L HELR+PL PIL ++R + +E+ IER A+ +L++DLLDVSR+ QG Sbjct: 8 VLSHELRSPLNPILGWSRILRSKQLSPTKVEQALETIERNAKLQAQLIEDLLDVSRILQG 67 Query: 59 KINLQKKKLEIADIISKAIETASPLLEERQHRLTVNVPAQGLQVHADPERLTQVLANLLT 118 K+ L + +A I+ A+ET E + + + V D RL QV+ NLL+ Sbjct: 68 KMTLNVASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQNRLQQVVWNLLS 127 Query: 119 NACKYTENRGHIRVDAMLDNNQIVVEIRDNGIGIRADMLPHVFEMFAQETQAIDRAGGGL 178 NA K+T + G I V N ++++D+G GI + LP+VFE F QE A R GGL Sbjct: 128 NAVKFTPSGGQIEVQLEQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQEDGATTRQFGGL 187 Query: 179 GLGLAIVRSLTELHGGTVHVFSAGPGTGSVFTIKLP 214 GLGLAIVR TELHGGTV V S G G+ FT++LP Sbjct: 188 GLGLAIVRHFTELHGGTVQVSSLGQDLGATFTVRLP 223