BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0030.p (198 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 181 1e-45 mll7060 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 104 1e-22 SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 75 1e-13 BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella me... 62 9e-10 DR0815 [K] COG1802 Transcriptional regulators Dra Deinococcus ra... 59 1e-08 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/205 (46%), Positives = 127/205 (61%), Gaps = 36/205 (17%) Query: 11 LRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRGAY-- 68 LR+ IE I G+ PG+ LDET LA +FGVSRTPIREAL+QL+++G++ +RPRRGA Sbjct: 9 LRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIRPRRGAVVV 68 Query: 69 ----------------------------------GSLMAAHQACKDARDAVDPDTYFYKN 94 +L+AAH+ C++A + + D Y+Y+N Sbjct: 69 DPAPQRVYEMFEVMAELEGMAGALAARRHTEEDSAALLAAHEKCREAVLSEETDRYYYEN 128 Query: 95 EDFHGQIYAGSHNAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNAIIAGDS 154 E FH IY SH+ FLEEQ L RRLRPYRRLQLRVR+R+K S+ EH +V AI++G++ Sbjct: 129 EIFHRAIYTASHSGFLEEQCTTLHRRLRPYRRLQLRVRNRMKVSFREHGEIVEAILSGNT 188 Query: 155 ERTVELLRQHVMIQGQRFADLVASL 179 + E LR HV +QG RF DLVA+L Sbjct: 189 DGAREGLRSHVAVQGDRFGDLVANL 213 >mll7060 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 230 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 96/200 (48%), Gaps = 36/200 (18%) Query: 14 SIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRGAYGSLMA 73 +I + I G L PG+ LDE LA +F VSRTP+REAL QL++MG++ RP RGA +++ Sbjct: 20 AIGDRIVTGALRPGEKLDEVSLAARFEVSRTPVREALGQLSAMGLVERRPNRGAIVAVVT 79 Query: 74 ------------------------------------AHQACKDARDAVDPDTYFYKNEDF 97 HQA + Y Y N +F Sbjct: 80 QEHLASMFESMAELESICARFSAERMTSSERRGLEIEHQASGRMVQLGAEEDYEYFNTEF 139 Query: 98 HGQIYAGSHNAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNAIIAGDSERT 157 H ++Y G+H+ ++E + RL P+RR Q R+ RL +S+ EH+ +V AI+ GDS Sbjct: 140 HSRLYRGAHSTHIQELTATTRSRLAPFRRAQFRLPGRLAKSWQEHDLIVTAIMRGDSVAA 199 Query: 158 VELLRQHVMIQGQRFADLVA 177 + R HV I + A A Sbjct: 200 GKAARDHVSIVSEASAVFAA 219 >SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 228 Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 36/204 (17%) Query: 9 ETLRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRGAY 68 +TL + ++I G L PG L E L EQ GVSRTP+REA+ LAS G++ + P RGA Sbjct: 25 DTLVSHLRDMIIEGDLPPGTRLHEGQLGEQLGVSRTPLREAIKYLASEGLVELVPSRGAV 84 Query: 69 GSLMAAHQ------------------ACKDARDAV------------------DPDTYFY 92 +A AC+ A DA D Y+ Sbjct: 85 VKRFSAKDVRDMLTVLQTLEELAGRLACETATDAEIAEVRALHDEMVRRYEAGDRMQYYK 144 Query: 93 KNEDFHGQIYAGSHNAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNAIIAG 152 N+D H I S NA L + +LQ RL+ R + ++ + EH+ ++ A+ A Sbjct: 145 LNQDIHSAIARLSGNAALADMHAMLQTRLKRIRFIGHEGPEKWAAAVAEHQEMIAALEAR 204 Query: 153 DSERTVELLRQHVMIQGQRFADLV 176 D R E+L H+ +R D V Sbjct: 205 DKARLSEVLGLHLTRAWERVRDAV 228 >BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 238 Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 80/199 (40%), Gaps = 42/199 (21%) Query: 13 ESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRG------ 66 E++ E I G APG L + +A +FG+SRTP+REAL L G+++ P RG Sbjct: 28 EALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRGVRVASA 87 Query: 67 -------AYG----------------------SLMAAHQACKD-ARDAVDPDTYFYKNED 96 AY + + AH A +D D DP Y N D Sbjct: 88 DLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAYTQSNVD 147 Query: 97 FHGQIYAGSHNAFLEEQA---RVLQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNAIIAGD 153 FH + + NA L R+ + P L + DR + + EH +V AI A D Sbjct: 148 FHMAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSV---DRARDAIREHAAIVEAIAARD 204 Query: 154 SERTVELLRQHVMIQGQRF 172 E L R H+ R Sbjct: 205 GEEAERLARAHIRATTARL 223 >DR0815 [K] COG1802 Transcriptional regulators Dra Deinococcus radiodurans Length = 267 Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 36/183 (19%) Query: 22 GKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRGAYGSLMAAHQA--CK 79 G++APG+ L E L + GVSRTPIREA+++L G++V +GA L++A +A Sbjct: 54 GEIAPGERLGEVELGQHLGVSRTPIREAIMRLTQDGLLVAEANKGARVRLLSAAEARDTY 113 Query: 80 DARDAVD------------PDTYF-----------YKNED----------FHGQIYAGSH 106 R+ +D PD + ED FH I +H Sbjct: 114 AVREELDGLAAALAAAQHTPDDAHALSAALRALNAVQGEDYREQTRLDLAFHRAITHAAH 173 Query: 107 NAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNAIIAGDSERTVELLRQHVM 166 NA L + AR L++R+ + + R + + +H +++A++ DS E R HV Sbjct: 174 NAALTDLARNLEQRVALIKH-RTRTYNARPETAAQHAALLDAVLGRDSAAAREAARLHVR 232 Query: 167 IQG 169 G Sbjct: 233 TFG 235