BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0014.p (742 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 286 1e-76 CC0896 Non COG 261 5e-69 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 234 7e-61 AGl1027 [T] COG5001 Predicted signal transduction protein contai... 227 1e-58 SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti 226 1e-58 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/425 (39%), Positives = 251/425 (59%), Gaps = 9/425 (2%) Query: 298 ELEIRRLAYWDPLTDLPNRVQFATLLNTAIERARTTGGQCHILMMDLDRFQHVNDVLGHS 357 E IR+LA++D LT L NR F L+ R + +L +DLD F+ VND GH Sbjct: 335 ENRIRQLAHYDTLTGLANRTNFREQLDA---RLAAPEARLGLLYIDLDGFKLVNDTKGHR 391 Query: 358 FGDNLLRQVGRRLEQQLERENDKVARLGGDEYAILLPATDQVEAVRQAKRILSSLEVPLS 417 GD LL +V +RL +R +ARLGGDE+A+L+P D A A ++ +L P + Sbjct: 392 AGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATALIEALGAPYA 451 Query: 418 ID-EQTVDLGAGIGIAGYPENGENSETLLSNAEVAMYVAKRRGSGFT-VYEPSIDKSSQE 475 + +Q V +GA IGIA P +G ++E LL+ A++A+Y AK G G ++ ++ Q Sbjct: 452 LGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADMETRIQA 511 Query: 476 SLSLLSELRRALD-RNEFLLYVQPKVDLASGRVVGAEALVRWMHPEKGFIGPDNFIPFAE 534 L ++LR AL+ ++ ++ QP VD+A+G+V EALVRW H E+G++ PD F+P AE Sbjct: 512 RALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVPPDEFVPIAE 571 Query: 535 TTGFIRMLTSWMLGRTAILCSELQRRGISLKFSVNLSTRDLLDQDLPQHFADILERNSLA 594 +G I L ++L R C E R + +VN+S L L Q L + LA Sbjct: 572 QSGLIDQLGRFVLHRA---CREATRWEDGARVAVNVSPMQLGKATLAQTVHAALIDSGLA 628 Query: 595 PSSMCLEITESAIMDDPVRAQLTLERLHAMGVELAIDDFGTGYSSLAYLKRLPVDELKID 654 P + +E+TE+A++ + + L +L+ MGV +A+DDFGTGYSSLA+L+ P D++KID Sbjct: 629 PDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKIKID 688 Query: 655 KSFVMNMEHDADDAKIVKSTIDLGHNMGLRVVAEGLETLAVWNLLRQMGCDQAQGYFMSK 714 +SFV ++ D A +V++ DLG +G+ VAEG+ET A +R+ GC +AQGY+ + Sbjct: 689 RSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYYYGR 748 Query: 715 PMPGD 719 P P D Sbjct: 749 PAPSD 753 >CC0896 Non COG Length = 677 Score = 261 bits (666), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 153/425 (36%), Positives = 243/425 (57%), Gaps = 6/425 (1%) Query: 303 RLAYWDPLTDLPNRVQFATLLNTAIERARTTGGQCHILMMDLDRFQHVNDVLGHSFGDNL 362 RLA D LTDLPNR ++ L+ +E AR +G ++DLD F+ +ND GH+ GD L Sbjct: 227 RLANLDSLTDLPNRRRYFAELDARVEAARQSGRGFVAGVIDLDDFKPINDAFGHATGDRL 286 Query: 363 LRQVGRRLEQQLERENDKVARLGGDEYAILLPATDQVEAVRQAKR-ILSSLEVPLSIDEQ 421 L +VGRRL + + ARLGGDE+ +++ A + +A+R R + +SL+ + Sbjct: 287 LIEVGRRL-KAFDGAPILAARLGGDEFGLIIDAALEPDALRVLGRELCASLQATYDLRGV 345 Query: 422 TVDLGAGIGIAGYPENGENSETLLSNAEVAMYVAKRRGSGFTVYEPSIDKSSQESLSLLS 481 +GA IG +P + SE L A+ A+Y AK+ G G V +++ ++++ Sbjct: 346 RAQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDERHEAAIRDMAVVE 405 Query: 482 ELRRALD-RNEFLLYVQPKVDLASGRVVGAEALVRWMHPEKGFIGPDNFIPFAETTGFIR 540 + R+ D E ++ QP VD+ S R + EAL RW PE G I PD FI AE +G I Sbjct: 406 QALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVFIGAAERSGQIV 465 Query: 541 MLTSWMLGRTAILCSELQRRGISLKFSVNLSTRDLLDQDLPQHFADILERNSLAPSSMCL 600 +T ++ + E++ + ++ S+NLS RD+ + + I+ + +AP + Sbjct: 466 EITRLLVAKA---LREMRAWPMDVRVSINLSARDIASMENVRRLLAIVSESCIAPHRIDF 522 Query: 601 EITESAIMDDPVRAQLTLERLHAMGVELAIDDFGTGYSSLAYLKRLPVDELKIDKSFVMN 660 EITE+AI+ D +A+ L H +GV A+DDFGTG+SSL++L+ LP+D+LKID SFV + Sbjct: 523 EITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPLDKLKIDASFVSD 582 Query: 661 MEHDADDAKIVKSTIDLGHNMGLRVVAEGLETLAVWNLLRQMGCDQAQGYFMSKPMPGDR 720 +EH+ IV++ + LG N+ + V EG+ET A + + +G QGY ++PMP + Sbjct: 583 IEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHFARPMPAEA 642 Query: 721 LIEWL 725 + +L Sbjct: 643 VPGYL 647 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 234 bits (596), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 117/263 (44%), Positives = 162/263 (61%), Gaps = 1/263 (0%) Query: 462 FTVYEPSIDKSSQESLSLLSELRRALDRNEFLLYVQPKVDLASGRVVGAEALVRWMHPEK 521 + +E S++ + + L L+ +LR AL+R+E +L+ QPK G VVG EALVRW HPE+ Sbjct: 1 YCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPER 60 Query: 522 GFIGPDNFIPFAETTGFIRMLTSWMLGRTAILCSELQRRGIS-LKFSVNLSTRDLLDQDL 580 G + PD FIP AE TG I L +W+L ++ +R G + +VNLS L Sbjct: 61 GLVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAAL 120 Query: 581 PQHFADILERNSLAPSSMCLEITESAIMDDPVRAQLTLERLHAMGVELAIDDFGTGYSSL 640 D L R++L P + LEITES M D + L++LHAMGV ++IDDFGTGYSSL Sbjct: 121 VDTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSL 180 Query: 641 AYLKRLPVDELKIDKSFVMNMEHDADDAKIVKSTIDLGHNMGLRVVAEGLETLAVWNLLR 700 YLKRLP ELKID+ FV ++ HD++DA IV + + LG + LR+VAEG+ET A L Sbjct: 181 LYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLT 240 Query: 701 QMGCDQAQGYFMSKPMPGDRLIE 723 ++GC QG + +PM ++E Sbjct: 241 RLGCHALQGNLLGRPMTAQAVLE 263 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 150/416 (36%), Positives = 211/416 (50%), Gaps = 9/416 (2%) Query: 304 LAYWDPLTDLPNRVQFATLLNTAIERARTTGGQCHILMMDLDRFQHVNDVLGHSFGDNLL 363 LA D LT LPNR F L + AR G + + ++DLD F+ VND+ GHS GD LL Sbjct: 220 LANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRLL 279 Query: 364 RQVGRRLEQQLERENDKVARLGGDEYAILLPAT-DQVEAVRQAKRILSSLEVPLSIDEQT 422 V +RL L+ K RLGGDE+AI+ P D + V A I L P + E T Sbjct: 280 INVSKRLTANLK--ASKAFRLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGT 337 Query: 423 VDLGAGIGIAGYPENGENSETLLSNAEVAMYVAK--RRGSGFTVYEPSIDKSSQESLSLL 480 V + A +GIA +P E L A+ A+Y AK RRG +++ +K + Sbjct: 338 VHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDA-VLFDAEHEKQINIEARIE 396 Query: 481 SELRRALDRNEFLLYVQPKVDLASGRVVGAEALVRWMHPEKGFIGPDNFIPFAETTGFIR 540 L+++ +NE + QP VD+ G+ G EAL RW P G + P F AE G + Sbjct: 397 HLLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVG 456 Query: 541 MLTSWMLGRTAILCSELQRRGISLKFSVNLSTRDLLDQDLPQHFADILERNSLAPSSMCL 600 LT +L S SL+ S NLS +DL + I+E + + L Sbjct: 457 SLTRPLLKMALASASTWDP---SLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRLDL 513 Query: 601 EITESAIMDDPVRAQLTLERLHAMGVELAIDDFGTGYSSLAYLKRLPVDELKIDKSFVMN 660 EITE+A D + + +++ L +G +++DDFGTGYSSL L LP+ ++KID+SFV + Sbjct: 514 EITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTD 573 Query: 661 MEHDADDAKIVKSTIDLGHNMGLRVVAEGLETLAVWNLLRQMGCDQAQGYFMSKPM 716 + KIVKS + L +M L V EG+ET A L +G QGY + P+ Sbjct: 574 LHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 629 >SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 257 Score = 226 bits (576), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 123/249 (49%), Positives = 157/249 (63%), Gaps = 7/249 (2%) Query: 475 ESLSLLSELRRALDRNEFLLYVQPKVDLASGRVVGAEALVRWMHPEKGFIGPDNFIPFAE 534 E L ELR AL R EFLL+ QP++ L +GR+ AEAL+RW HP +G I P FIP AE Sbjct: 1 EKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAFIPLAE 60 Query: 535 TTGFIRMLTSWMLGRTAILCSEL---QRRGIS-LKFSVNLSTRDLLDQDLPQHFADILER 590 TG I + W+L RTA C +L Q G+ L SVN+S R +++ A +LE Sbjct: 61 ETGLIVPIGDWVL-RTA--CRQLKAWQDAGLPPLIVSVNVSARQFRERNWAARVAAVLEE 117 Query: 591 NSLAPSSMCLEITESAIMDDPVRAQLTLERLHAMGVELAIDDFGTGYSSLAYLKRLPVDE 650 L + LE+TES IM D A T+ L A+GV LAIDDFGTGYSSL+ LKR PV Sbjct: 118 TCLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRR 177 Query: 651 LKIDKSFVMNMEHDADDAKIVKSTIDLGHNMGLRVVAEGLETLAVWNLLRQMGCDQAQGY 710 LKID+SFV ++ HDADD I + I L +GLRV+AEG+ET A L++ GC + QGY Sbjct: 178 LKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGY 237 Query: 711 FMSKPMPGD 719 F S+P+PG+ Sbjct: 238 FFSQPLPGE 246