BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0011.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0820 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...    84   2e-16
CC1664 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    66   3e-11
alr5296 [K] COG1309 Transcriptional regulator Nos Nostoc sp. PCC...    65   7e-11
PA1403 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    62   8e-10
mll3939 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...    59   4e-09

>RSc0820 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 225

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 2   VDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQ 61
           VD I+ A   +LV  G+ +  TN +AE AG+++GSLYQYFPNK A+I  L+ RHV +  +
Sbjct: 23  VDAIMQAATYILVKFGWERLTTNAIAERAGVNIGSLYQYFPNKQAIIAELQRRHVLQTRE 82

Query: 62  LFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFP-SFHLPVSNHVR 117
           +  + + ++    SL      L+ A++  H V P ++R ++ E P S  +P+ +  R
Sbjct: 83  ILSKALPQVSEQRSLREALTLLVVAMIDEHRVAPAVHRAIDAELPRSVRVPLGDESR 139


>CC1664 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 210

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 2   VDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQ 61
           V  IL+A AR+L  +G A   TN VA+ AG+S+G+LY+Y+P+K A++ AL ER      Q
Sbjct: 31  VACILEAAARILEAKGEAGFTTNAVAQRAGVSIGTLYRYYPDKQAILLALAERETEAHRQ 90

Query: 62  LFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSFHLPVSNHVR--QR 119
               V+A      S+ RD  ALI A V A     +  RI  +      L  ++H     R
Sbjct: 91  A---VIAVTAGEPSVARD-RALIRAFVQAFARRDQARRIAMKAM----LAEADHAELAAR 142

Query: 120 FFEAIRGVLIKHRKSISAPDVDVAAFVVQRMLKALVNAVVLIAPPGLNAASVRSEIVPAV 179
           F  A  G+    + +   P   V AFV+ R +   + A VL     L +     E+V   
Sbjct: 143 FSAAENGL----KDAAGRPLSRVQAFVLARAVHGALRAAVLEGVDFLQSREFEDELVRLG 198

Query: 180 VGYL 183
             YL
Sbjct: 199 RAYL 202


>alr5296 [K] COG1309 Transcriptional regulator Nos Nostoc sp. PCC 7120
          Length = 266

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 16/111 (14%)

Query: 3   DTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQL 62
           D ILD  A +L D G    NTN +A+ A IS+GS+YQYF NK+A++ AL ER+   M QL
Sbjct: 72  DLILDTAADLLADGGAEAINTNALADRANISIGSVYQYFSNKEAILSALGERY---MQQL 128

Query: 63  FEEVVA--KMDASGSLVRDFEALIEALVAAHLVEPELNRILEEEFPSF-HL 110
               VA  + D SG    DF A+++      +++P +    E + P+F HL
Sbjct: 129 SRNTVAALQQDVSG---LDFAAMVD-----RVIDPMI--AFERQHPAFRHL 169


>PA1403 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 210

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 1  MVDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARML 60
          +V +IL+A  +VL   G  +  T  VAE AG+S+GSLYQYFPNK A++F L+     R  
Sbjct: 23 LVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTT 82

Query: 61 QLFEEVV 67
          +L  E++
Sbjct: 83 RLLGEIL 89


>mll3939 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 209

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%)

Query: 2   VDTILDAMARVLVDRGYAKTNTNLVAEAAGISVGSLYQYFPNKDALIFALRERHVARMLQ 61
           V+ +L A + ++ ++G        VAE AG+S+GSLYQ+FP+K A+I+AL ER+ A    
Sbjct: 26  VERMLAAASALITEQGSDAMRMGEVAERAGVSIGSLYQFFPDKRAIIWALAERYTAESQA 85

Query: 62  LFEEVVAKMDASGSLVRDFEALIEALVAAHLVEPELNRIL 101
                +  +  +  L R F  L++      L EP +  I 
Sbjct: 86  CISAALKDVSDAEGLRRAFSELVDIYYGLFLAEPVMRDIW 125