BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0009.p (389 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 367 e-101 RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 260 4e-69 PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 250 3e-66 PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 219 1e-56 VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae 194 3e-49 >RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 489 Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust. Identities = 188/369 (50%), Positives = 251/369 (68%), Gaps = 1/369 (0%) Query: 1 VTADASFTRNLFPETTIYP-PPYGGSWYNEKKAFLNLGYELDLWGKNHAALAQAVSQQKA 59 V DA TR F ++ P GG+W E K L + Y+LD WGKN AAL A+S KA Sbjct: 98 VGLDAEMTRQRFSSYDLFEGTPLGGNWVTESKIQLGVSYDLDFWGKNRAALESALSDDKA 157 Query: 60 AEAAAQETRLVLASSIASTYNQLATEYALHDIAQRTVNQRESLQRITADRVKTGLDTQIE 119 EA +Q +RL+L++S+A TY +LA YA D+A+RT+ QR L ++ R++ GLDTQ+E Sbjct: 158 MEAESQASRLMLSTSVARTYVKLAALYAQRDVAERTIAQRRELVSLSGQRLRAGLDTQVE 217 Query: 120 RNQSQGSSAEARAQLVQSEGQITLTRQQLGVLIGKGPDRGLQIAAPRMATLITPELPAQL 179 Q++ + A A+ +L Q + QI L R QL L+GKGPDRGL IA P + TP+LP L Sbjct: 218 TTQARANIAAAQTELEQVDEQIALARNQLAALLGKGPDRGLAIARPTLLAQPTPKLPDHL 277 Query: 180 PLNLLGRRPDIVAARWQVEAATRDIDVAKARFYPDINLSAMIGFDSLLNSNPFTASSKSI 239 ++L+GRRPD+VAARW+VEA +DIDVAKA+F PDI+L+A +G S+ N +++ + Sbjct: 278 SIDLIGRRPDLVAARWRVEATAKDIDVAKAQFLPDISLTAFLGLASIAPENLLLGNARQL 337 Query: 240 AFGPAISLPIFEGGALRANLKGSYASYDMAVASYNQTLNEAYGDVARQITGIRSIDRQLP 299 GPA+ LPIFEGG LRANL+G YA YD AVASYNQTL EA D A QIT + SID Q+ Sbjct: 338 GIGPALRLPIFEGGKLRANLRGKYAGYDAAVASYNQTLTEALHDTADQITSLHSIDTQID 397 Query: 300 IRREALASSQRAYDLARERYRIGLTSQLVVLNAETALLGQQQALINLEASKRNQQIGLFK 359 I+R ALA ++RAY LAR RY GL +QL VLNAE+ +L Q++ L+A + + Q+ L K Sbjct: 398 IQRTALAEAERAYSLARTRYGAGLGTQLTVLNAESTVLQQRRLAALLQARRLDAQMALIK 457 Query: 360 ALGGGFDAQ 368 ALGGG+ A+ Sbjct: 458 ALGGGYTAE 466 >RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 475 Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 150/346 (43%), Positives = 213/346 (61%), Gaps = 1/346 (0%) Query: 23 GGSWYNE-KKAFLNLGYELDLWGKNHAALAQAVSQQKAAEAAAQETRLVLASSIASTYNQ 81 G S +NE +A L+ +E+D WG+N A+LA A S +A+ A A + RL LAS+IAS+Y Sbjct: 127 GSSDWNEVGRATLDFSWEIDFWGRNRASLAAATSDLEASRADAAQARLTLASAIASSYAD 186 Query: 82 LATEYALHDIAQRTVNQRESLQRITADRVKTGLDTQIERNQSQGSSAEARAQLVQSEGQI 141 LA YA+ D + + R ++ +R +GL+T+ Q++ A A +L++ + I Sbjct: 187 LAGLYAVRDADEAALAVRRHSAQLFTERFASGLETRSGVKQAEALLASAEGELLRVDESI 246 Query: 142 TLTRQQLGVLIGKGPDRGLQIAAPRMATLITPELPAQLPLNLLGRRPDIVAARWQVEAAT 201 LTR L L+G GPDRGL I P +A LPA+L +NLLGRRPD+VAAR Q EA Sbjct: 247 GLTRHALAALVGAGPDRGLTIRRPSVAIRSPEGLPAELAVNLLGRRPDVVAARLQAEAQV 306 Query: 202 RDIDVAKARFYPDINLSAMIGFDSLLNSNPFTASSKSIAFGPAISLPIFEGGALRANLKG 261 ID +A FYP++NLSA IGF+S+ SN F + S+ + GPA+SLPIF GG LR LK Sbjct: 307 HRIDSKRAEFYPNVNLSAFIGFESIGLSNLFKSGSRIGSIGPAVSLPIFNGGRLRGELKR 366 Query: 262 SYASYDMAVASYNQTLNEAYGDVARQITGIRSIDRQLPIRREALASSQRAYDLARERYRI 321 + ASYD AVA+YN+TL +A DVA +++ +L EA ++++AY + RY Sbjct: 367 AQASYDEAVANYNRTLTQALQDVADAWLSRKALAPRLAKVEEAFRAAEQAYRVTLNRYEG 426 Query: 322 GLTSQLVVLNAETALLGQQQALINLEASKRNQQIGLFKALGGGFDA 367 GL S L VL A+ LL Q+AL +L++ + + +ALGGG+ A Sbjct: 427 GLASYLEVLTAQDTLLTNQRALTDLQSRAFTLDVAMTRALGGGYRA 472 >PA5158 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 492 Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 219/365 (60%), Gaps = 1/365 (0%) Query: 1 VTADASFTRNLFPETTIYPPPYGGSWYNEKKAFLNLGYELDLWGKNHAALAQAVSQQKAA 60 + A AS++ P T++ P P GG + K L Y+ DLWG AA A+ Q AA Sbjct: 112 LDAKASYSGIRAP-TSVAPAPLGGRYSAIKYLSLGFNYDFDLWGGERAAWEAALGQANAA 170 Query: 61 EAAAQETRLVLASSIASTYNQLATEYALHDIAQRTVNQRESLQRITADRVKTGLDTQIER 120 +Q R+ L++SIA Y+ LA + + D+A+ + + + + ++ R+ GLD++++ Sbjct: 171 RIDSQAARIGLSASIARAYSDLAHAFTVRDLAEEELKRSQRMTELSQKRMSAGLDSKVQL 230 Query: 121 NQSQGSSAEARAQLVQSEGQITLTRQQLGVLIGKGPDRGLQIAAPRMATLITPELPAQLP 180 Q+Q A AR QL +E I R L VL+GKGPDRGL++ P+ + LP+ LP Sbjct: 231 QQTQTQLATARQQLSAAEQDIASARIALAVLLGKGPDRGLELQRPQPLNPASLSLPSVLP 290 Query: 181 LNLLGRRPDIVAARWQVEAATRDIDVAKARFYPDINLSAMIGFDSLLNSNPFTASSKSIA 240 LLGRR DIVAARW+VEAA R+ID AK FYP++NL AM G +L S+ A S+ Sbjct: 291 AELLGRRADIVAARWRVEAARRNIDSAKTEFYPNLNLGAMAGLAALHTSDVLQAPSRFFQ 350 Query: 241 FGPAISLPIFEGGALRANLKGSYASYDMAVASYNQTLNEAYGDVARQITGIRSIDRQLPI 300 PAISLPIF+GG RANL A YD+AV YN+TL +A G+V+ + +RS+++Q+ Sbjct: 351 VAPAISLPIFDGGRRRANLAERDADYDLAVGQYNKTLVQALGEVSDDLGKLRSLEQQVID 410 Query: 301 RREALASSQRAYDLARERYRIGLTSQLVVLNAETALLGQQQALINLEASKRNQQIGLFKA 360 +R+A ++ +DLA RY G+ S L L+ + LL ++ L +LE+ + + + L +A Sbjct: 411 QRQARDIARSNFDLAMRRYGEGVGSYLDALSVQQQLLVAERQLASLESQQIDLSVQLVQA 470 Query: 361 LGGGF 365 LGGGF Sbjct: 471 LGGGF 475 >PA3894 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 496 Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 194/342 (56%), Gaps = 7/342 (2%) Query: 1 VTADASFTRNLFPETTIYPP---PYGGSWYNEKKAFLNLGYELDLWGKNHAALAQAVSQQ 57 + S R+ +P+ Y P SW N + LN Y+LDLWG++ + +AV Sbjct: 104 IEGKGSLVRHRWPDDYFYGPGDLARTTSWNNSTEIGLN--YKLDLWGRDRSDSERAVDLA 161 Query: 58 KAAEAAAQETRLVLASSIASTYNQLATEYALHDIAQRTVNQRESLQRITADRVKTGLDTQ 117 A A A++ +L L +I Y QL+ +YA DIA+ + Q+ + + R++ G+ T Sbjct: 162 HMAAAEARQAQLELEGNIVRAYVQLSLQYAEMDIAKAMLQQQRDILALAQRRLRGGIGTH 221 Query: 118 IERNQSQGSSAEARAQLVQSEGQITLTRQQLGVLIGKGPDRGLQIAAPRMATLITPELPA 177 E +Q++ E ++ + +I LTR L L GKGP G I P + P LP+ Sbjct: 222 FEVSQAEVPLPETERRIEVIDEEIQLTRNLLAALAGKGPGEGRTIRRPSLNLAAQPSLPS 281 Query: 178 QLPLNLLGRRPDIVAARWQVEAATRDIDVAKARFYPDINLSAMIGFDSLLNS--NPFTAS 235 LP LLGRRPD+VA RWQV A + +DVA+A FYP+++L A +GF ++ F ++ Sbjct: 282 ALPAELLGRRPDVVARRWQVAALAKGVDVARADFYPNVDLMASVGFSAVGGGMLEFFRSA 341 Query: 236 SKSIAFGPAISLPIFEGGALRANLKGSYASYDMAVASYNQTLNEAYGDVARQITGIRSID 295 + + GPA++LPIF+GG LR+ L + A YD AV YNQTL +A +++ Q+ + S+D Sbjct: 342 KYTYSAGPAVTLPIFDGGRLRSQLGEAAAGYDAAVEQYNQTLVDALKNISDQLIRLHSVD 401 Query: 296 RQLPIRREALASSQRAYDLARERYRIGLTSQLVVLNAETALL 337 Q +++AS+Q+ YD+A Y+ GLT L VLNA+T L Sbjct: 402 IQKDFAAQSVASAQKTYDIATLAYQRGLTDYLNVLNAQTRLF 443 >VC1409 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae Length = 484 Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/351 (36%), Positives = 198/351 (56%), Gaps = 2/351 (0%) Query: 20 PPYGGSWYNEKKAFLNLGYELDLWGKNHAALAQAVSQQKAAEAAAQETRLVLASSIASTY 79 PP G W + LN Y+ D WGKN AA+ A S+ AAEA + RL++++SIA+ Y Sbjct: 136 PPDG--WNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAY 193 Query: 80 NQLATEYALHDIAQRTVNQRESLQRITADRVKTGLDTQIERNQSQGSSAEARAQLVQSEG 139 +LA YA + + R + R GL+T +Q++ +A A+L+ + Sbjct: 194 AELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQE 253 Query: 140 QITLTRQQLGVLIGKGPDRGLQIAAPRMATLITPELPAQLPLNLLGRRPDIVAARWQVEA 199 I L + L L+G+GPDR I P + LP++ + LLG R DI AARW+ EA Sbjct: 254 SIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEA 313 Query: 200 ATRDIDVAKARFYPDINLSAMIGFDSLLNSNPFTASSKSIAFGPAISLPIFEGGALRANL 259 A + + +A+A+FYPD+ LSA IG+ + + F + + + A GPAI LP+F GG L L Sbjct: 314 AAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEGQL 373 Query: 260 KGSYASYDMAVASYNQTLNEAYGDVARQITGIRSIDRQLPIRREALASSQRAYDLARERY 319 + A Y AVA YN TL +A +VA +T +++ ++ +A+ +++A +A RY Sbjct: 374 TSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIATNRY 433 Query: 320 RIGLTSQLVVLNAETALLGQQQALINLEASKRNQQIGLFKALGGGFDAQQA 370 + GL + L VL AE +LL Q+AL+NL++ + + L ALGGGF+ ++ Sbjct: 434 QGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFETTES 484