BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0047.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl2448 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58...    64   1e-10
AGpA755_3 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C...    62   4e-10
AGl1929 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58...    60   8e-10
BMEI0493 [TK] COG0745 Response regulators consisting of a CheY-l...    60   9e-10
YPO3965_2 [T] COG0784 FOG Ype Yersinia pestis                          59   3e-09

>AGl2448 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 119

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 19  ILVVEDNLDSLQ-LVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGMSGLE 77
           IL+ ED  D+L+  V   L + GH        E+ L +L+Q  FD+L +D+ +P M G+E
Sbjct: 4   ILITEDE-DALRAFVARALRLDGHETHEAADGEQGLEKLQQTSFDLLLSDIRMPVMDGIE 62

Query: 78  LAKRTSEKTPALKIIFASGYGAQISKNIGPGTF---SLPKPYDIDQLQDILDNIGRQL 132
           LA R +E  PA++I+  +GY  Q  +     T     + KP+    L DI   + R L
Sbjct: 63  LAHRAAESFPAMRILLMTGYAEQRERADDLATKIVDVVSKPF---ALPDIRKAVARAL 117


>AGpA755_3 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 116

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 18  HILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQ-HDFDVLFTDVSLPGMSGL 76
            IL+V+D+        ++L  LGH      S +EAL+ ++    FD++ TD S+PGM+G 
Sbjct: 5   RILLVDDDALIAMSSADMLTDLGHEVVEAHSGKEALSLIDGGATFDLVITDYSMPGMTGA 64

Query: 77  ELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFSLPKPYDIDQLQDILDNI 128
           ELAK   ++ P+L I+ ASGY       +      L KPY  D+L  +L  I
Sbjct: 65  ELAKAVRDRLPSLPIVLASGY-VDFPSGVELEVARLSKPYSQDELALMLSKI 115


>AGl1929 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 121

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 18  HILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGMSGLE 77
            IL+ ED+ D  + + + L   G++     +   A   L +  F +L TD+ +P M G+E
Sbjct: 5   KILLAEDDNDMRRFLVKALEKAGYKVSSFDNGASAYDRLREEPFSLLLTDIVMPEMDGIE 64

Query: 78  LAKRTSEKTPALKIIFASGYGA---QISKNIGPGTFSLPKPYDIDQLQDILDNIGRQL 132
           LA+R +E  P LK++F +G+ A               L KP+    L+D++D + + L
Sbjct: 65  LARRATELDPDLKVMFITGFAAVALNADSKAPKDAKVLSKPF---HLRDLVDEVNKLL 119


>BMEI0493 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Bme
           Brucella melitensis
          Length = 241

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 18  HILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGMSGLE 77
           H+LVV+D+     L+ + L   G R    GSA EA  +LE  DFD+L  DV +PG +G+ 
Sbjct: 21  HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 80

Query: 78  LAK--RTSEKTPALKIIFASGYGAQISKNIGPGTFSLPKPYDIDQLQDILDNIGRQ 131
           L +  R  +  P L +   S   ++I          LPKP+D  +L   ++NI R+
Sbjct: 81  LTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 136


>YPO3965_2 [T] COG0784 FOG Ype Yersinia pestis
          Length = 114

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 19  ILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAEL-EQHDFDVLFTDVSLPG-MSGL 76
           +LV+ED  D  Q +CE L  LG+     G + +ALA + +  D  ++ +D+ LPG M+G 
Sbjct: 3   VLVLEDEPDVRQTLCEQLHQLGYLTLETGDSRQALALMADVPDISIVISDLMLPGDMTGA 62

Query: 77  ELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFSLPKPYDIDQLQDILDNI 128
           E+ ++     P LK++  SG   + SKN  P    L KP++  QL   L  +
Sbjct: 63  EVLQQARSVYPHLKLLLISGQDLRRSKNFMPEVELLRKPFNQQQLVQALQRV 114