BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0033.p         (165 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0238 [G] COG1523 Type II secretory pathway, pullulanase PulA ...   235   4e-62
PA2160 [G] COG1523 Type II secretory pathway, pullulanase PulA a...   212   3e-55
STM1558 [G] COG1523 Type II secretory pathway, pullulanase PulA ...   184   1e-46
SMb21446 [G] COG1523 Type II secretory pathway, pullulanase PulA...   160   8e-40
SSO2094 [G] COG1523 Type II secretory pathway, pullulanase PulA ...   147   1e-35

>RSp0238 [G] COG1523 Type II secretory pathway, pullulanase PulA and related
           glycosidases Rso Ralstonia solanacearum
          Length = 754

 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 125/146 (85%)

Query: 3   LVTPRHLQAGSPYPLGAHFDGLGINFAVFSGNATKIELCIFDATGRREVERLTLPECTDE 62
           L  P HL  G PYPLGA +DGLGINFAVFS NAT+I+LC+FD TGR+E+ RL LPECTDE
Sbjct: 2   LRLPSHLSPGKPYPLGAQWDGLGINFAVFSANATRIDLCLFDPTGRKELARLPLPECTDE 61

Query: 63  VWHGYLPDTSPGLVYGYRAYGPYEPQKGHRFNPNKLLLDPYARQLVGQVRWTDALFGYRL 122
           VWHGYLP    GLVYGYRAYGP+EP +GHRFNP+KLLLDPYAR+LVG +RW+DALFGYRL
Sbjct: 62  VWHGYLPGVESGLVYGYRAYGPWEPYRGHRFNPHKLLLDPYARRLVGALRWSDALFGYRL 121

Query: 123 HSAKGDLSFDRRDSAAAMPKAVVIEE 148
           +S++ DLSFDRRDSA A PKAVV +E
Sbjct: 122 NSSRADLSFDRRDSAPACPKAVVTDE 147


>PA2160 [G] COG1523 Type II secretory pathway, pullulanase PulA and related
           glycosidases Pae Pseudomonas aeruginosa
          Length = 716

 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 117/143 (81%)

Query: 5   TPRHLQAGSPYPLGAHFDGLGINFAVFSGNATKIELCIFDATGRREVERLTLPECTDEVW 64
            P  +  G P+PLGA +DGLG+NFA+FS +ATK+ELC+FDA G +E+ER+ LPE TDE+W
Sbjct: 8   APSRISEGHPFPLGATWDGLGVNFALFSAHATKVELCLFDARGEKEIERIELPEYTDEIW 67

Query: 65  HGYLPDTSPGLVYGYRAYGPYEPQKGHRFNPNKLLLDPYARQLVGQVRWTDALFGYRLHS 124
           HGYLPD  PG +YGYR +GPYEP  GHRFNPNKLLLDPYA+QLVG++RW++ALFGY + S
Sbjct: 68  HGYLPDAHPGQIYGYRVHGPYEPDAGHRFNPNKLLLDPYAKQLVGRLRWSEALFGYTIGS 127

Query: 125 AKGDLSFDRRDSAAAMPKAVVIE 147
           A  DLSFD RDSA  +PK+ VI+
Sbjct: 128 ADADLSFDERDSAPFVPKSKVID 150


>STM1558 [G] COG1523 Type II secretory pathway, pullulanase PulA and related
           glycosidases Sty Salmonella typhimurium LT2
          Length = 691

 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 111/158 (70%)

Query: 1   MTLVTPRHLQAGSPYPLGAHFDGLGINFAVFSGNATKIELCIFDATGRREVERLTLPECT 60
           MT      +++G  + LGA++DG G+NFA+FS +A ++ELC++D +G  E+ RL LPE T
Sbjct: 1   MTTNRAFEIRSGYSHTLGANYDGEGVNFAIFSAHAERVELCLYDPSGEHEIARLELPEYT 60

Query: 61  DEVWHGYLPDTSPGLVYGYRAYGPYEPQKGHRFNPNKLLLDPYARQLVGQVRWTDALFGY 120
           DE+WHGY+P   PG +YGYR YGPY+P+ GHRFNPNKLL+DPYAR+LVG ++W DA F Y
Sbjct: 61  DEIWHGYVPKLQPGALYGYRVYGPYDPENGHRFNPNKLLIDPYARELVGDIQWNDAHFAY 120

Query: 121 RLHSAKGDLSFDRRDSAAAMPKAVVIEEMPIGKKSRAR 158
           +L     DL+FD +DSA   PK  VI+      + R R
Sbjct: 121 QLLHDDKDLTFDDQDSAPFTPKCRVIDPDEANWEDRQR 158


>SMb21446 [G] COG1523 Type II secretory pathway, pullulanase PulA and related
           glycosidases Sme Sinorhizobium meliloti
          Length = 698

 Score =  160 bits (406), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 92/129 (71%)

Query: 17  LGAHFDGLGINFAVFSGNATKIELCIFDATGRREVERLTLPECTDEVWHGYLPDTSPGLV 76
           LGA + G G +FAVFS +A KIELC+F   GR E  R+ LP+   ++W GY+    PG +
Sbjct: 15  LGAEYTGQGTHFAVFSAHAEKIELCLFSEDGREETARMPLPKREGDIWSGYIEGIGPGTL 74

Query: 77  YGYRAYGPYEPQKGHRFNPNKLLLDPYARQLVGQVRWTDALFGYRLHSAKGDLSFDRRDS 136
           YGYRA+GPY+P  GHRFNPNKLLLDPYA+ + G + W DALFGY + S +GDLSFD RDS
Sbjct: 75  YGYRAHGPYDPHNGHRFNPNKLLLDPYAKLVAGDLIWDDALFGYTIGSPEGDLSFDERDS 134

Query: 137 AAAMPKAVV 145
           A  M K VV
Sbjct: 135 APFMVKGVV 143


>SSO2094 [G] COG1523 Type II secretory pathway, pullulanase PulA and related
           glycosidases Sso Sulfolobus solfataricus
          Length = 718

 Score =  147 bits (370), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/143 (46%), Positives = 98/143 (68%), Gaps = 3/143 (2%)

Query: 7   RHLQAGSPYPLGAHF--DGLGINFAVFSGNATKIELCIFDATGRR-EVERLTLPECTDEV 63
           R L+ G PYPLG+++  D  G+NF++FS NA K+EL ++  T ++   E + +   T ++
Sbjct: 10  RPLRPGDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEIIEVKNKTGDI 69

Query: 64  WHGYLPDTSPGLVYGYRAYGPYEPQKGHRFNPNKLLLDPYARQLVGQVRWTDALFGYRLH 123
           WH ++P   PG +Y YR YGPY+P+ G RFNPNK+L+DPYA+ + G V W DA+FGY++ 
Sbjct: 70  WHVFVPGLRPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFGYKIG 129

Query: 124 SAKGDLSFDRRDSAAAMPKAVVI 146
               DL++D RDS   +PK+VVI
Sbjct: 130 DQNQDLTYDERDSGEYVPKSVVI 152