BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0020.p         (165 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2134 [S] COG3652 Predicted outer membrane protein Pae Pseudomo...    98   7e-21
CC3563 Non COG                                                         69   4e-12

>PA2134 [S] COG3652 Predicted outer membrane protein Pae Pseudomonas
           aeruginosa
          Length = 190

 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 89/137 (64%), Gaps = 2/137 (1%)

Query: 21  ADKSFINSAAEAGNAEIKASKIALEKTTNPDVKSFATLMVDEHTTVGDDLKKLAATKNVE 80
           A ++F++ A+ AG AEI+A K+ALEK+T  DVK FA  M+D+H  V  +L+ LA  K +E
Sbjct: 49  APQTFVSEASAAGVAEIEAGKMALEKSTAADVKVFAKQMIDDHGKVNAELRSLAERKKLE 108

Query: 81  PPTEPSVAQRAKIAILEKLDGATFDKQYISMIGVSAHKDTVKLFSKHAAEAKDPDVKDFA 140
              + S+  +AK  +L+ L  A+FD  Y +   V+AH+  V+LF++ A    DP+++ FA
Sbjct: 109 VEDDASLTDKAKATLLD-LRDASFDPAYANN-QVAAHEKAVELFTQAADNLTDPELQAFA 166

Query: 141 AKTLPNLQHHLDMANAL 157
              LP L+HHL+MA AL
Sbjct: 167 KTHLPALKHHLEMARAL 183


>CC3563 Non COG
          Length = 231

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 3/141 (2%)

Query: 25  FINSAAEAGNAEIKASKIALEKTTNPDVKSFATLMVDEHTTVGDDLKKLAATKNVEPPTE 84
           F    A+    EI+A+K+A  ++TNP VK FA  M          L     T  V     
Sbjct: 83  FAAKLADGAMFEIEAAKLATSRSTNPSVKKFAIAMDAAQKKTSRSLNTAIITSGVTINLP 142

Query: 85  PSVAQRAKIAI--LEKLDGATFDKQYISMIGVSAHKDTVKLFSKHAAEAKDPDVKDFAAK 142
             ++Q  + A+  L K D   FDKQY  ++ +  H+ T+ L  ++A +   P +K FAA+
Sbjct: 143 TMLSQDLQDALDDLAKTDPKDFDKQYADVM-IDTHQSTLNLLQRYAQDGDTPALKTFAAE 201

Query: 143 TLPNLQHHLDMANALKAKLDA 163
           T P +Q HL+MA  LK    A
Sbjct: 202 TAPTIQEHLNMAEGLKKGFGA 222