BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0011.p         (83 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eutR [K] COG2207 AraC-type DNA-binding domain-containing protein...    75   3e-14
ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing protei...    75   3e-14
ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing prot...    75   3e-14
STM2454 [K] COG2207 AraC-type DNA-binding domain-containing prot...    74   6e-14
RSc1832 [K] COG2207 AraC-type DNA-binding domain-containing prot...    73   2e-13

>eutR [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco
           Escherichia coli K12
          Length = 350

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSP--HAVRVGDVAAAWGFS 58
           VSRRTLQ  F  +LGI P  +L+ +RLN VRR+L      +SP   ++ V D A  WGF 
Sbjct: 268 VSRRTLQNAFHAILGIGPNAWLKRIRLNAVRREL------ISPWSQSMTVKDAAMQWGFW 321

Query: 59  NFSQFSCDYKKLFGESPSSAL 79
           +  QF+ DY++LF E PS  L
Sbjct: 322 HLGQFATDYQQLFSEKPSLTL 342


>ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ
           Escherichia coli O157:H7 EDL933
          Length = 350

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 8/81 (9%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSP--HAVRVGDVAAAWGFS 58
           VSRRTLQ  F  +LGI P  +L+ +RLN VRR+L      +SP   +  V D A  WGF 
Sbjct: 268 VSRRTLQNAFHAILGIGPNAWLKRIRLNAVRREL------ISPWSQSTTVKDAAMQWGFW 321

Query: 59  NFSQFSCDYKKLFGESPSSAL 79
           +  QF+ DY++LF E PS  L
Sbjct: 322 HLGQFATDYQQLFAEKPSLTL 342


>ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs
           Escherichia coli O157:H7
          Length = 350

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 8/81 (9%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSP--HAVRVGDVAAAWGFS 58
           VSRRTLQ  F  +LGI P  +L+ +RLN VRR+L      +SP   +  V D A  WGF 
Sbjct: 268 VSRRTLQNAFHAILGIGPNAWLKRIRLNAVRREL------ISPWSQSTTVKDAAMQWGFW 321

Query: 59  NFSQFSCDYKKLFGESPSSAL 79
           +  QF+ DY++LF E PS  L
Sbjct: 322 HLGQFATDYQQLFAEKPSLTL 342


>STM2454 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sty
           Salmonella typhimurium LT2
          Length = 350

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 8/81 (9%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSP--HAVRVGDVAAAWGFS 58
           VSRRTLQ  F  +LGI P  +L+ +RLN VRR+L      +SP   +  V D A  WGF 
Sbjct: 268 VSRRTLQNAFHAILGIGPNAWLKRIRLNAVRREL------ISPWSQSATVKDAAMQWGFW 321

Query: 59  NFSQFSCDYKKLFGESPSSAL 79
           +  QF+ DY++LF E PS  L
Sbjct: 322 HLGQFATDYQQLFAEKPSLTL 342


>RSc1832 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso
           Ralstonia solanacearum
          Length = 342

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSPHAVRVGDVAAAWGFSNF 60
           VS R+L   F++ LG+SPM YLR LR+   R +LM G       A  V  VA  WGF++ 
Sbjct: 267 VSVRSLYTGFKEFLGVSPMHYLRDLRMERTRTELMSG------EATNVAGVALRWGFAHM 320

Query: 61  SQFSCDYKKLFGESPSSALR 80
            +FS DYK+ +GE+PS  LR
Sbjct: 321 GRFSNDYKQRYGETPSQTLR 340