BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0295.p (262 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0692 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 264 1e-70 nac [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 105 7e-23 Znac [K] COG0583 Transcriptional regulator EcZ Escherichia coli ... 105 1e-22 ECs2784 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 105 1e-22 AGl1169 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 99 8e-21 >STM0692 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 308 Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 135/260 (51%), Positives = 181/260 (69%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHARMSGHVSVGFAPSTASVLALT 60 LLQRT+ GV PT+AGLAF+ QAQLALRH D+A AA+ AR+SGHVSVG APSTAS+L + Sbjct: 47 LLQRTSRGVTPTNAGLAFYSQAQLALRHADDAILAAREARLSGHVSVGMAPSTASILGIP 106 Query: 61 FMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERLFVV 120 F++ ++ Y D+RLH+VESLSGNL M+N RQ+DLAI+F+ D R SA P+L+E+LF++ Sbjct: 107 FIHAMQENYADVRLHVVESLSGNLERMINTRQIDLAIVFQKDKILRWSARPILEEQLFLI 166 Query: 121 GSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGLAIL 180 GSH L+ + + + +PL+MPS HGLR + + IVAEIDGLA+L Sbjct: 167 GSHALLAALPDNPITPEQLAGIPLIMPSQGHGLRGRLDAVCQEHALNVEIVAEIDGLALL 226 Query: 181 MDVVRAGLAATIQPGAAASRLPASVVRLVQVADKGVRRRNLLASLPEDELSPAALATRIV 240 M VR GL AT+QPGAA S L +R++ V + + R N L SL +DEL+PA LA R+V Sbjct: 227 MRAVRDGLGATLQPGAAISHLDNDALRVIGVHNPVLSRPNFLVSLSDDELTPAGLAARVV 286 Query: 241 LKDVVRELLSESHWMGASLH 260 L V+R+L+ W GA+L+ Sbjct: 287 LTKVMRQLVDAGEWPGATLY 306 >nac [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 305 Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 7/208 (3%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHA--RMSGHVSVGFAPSTA-SVL 57 LL RT GV PTDAG + A+ LR ++A A + +SG VS+GFAP TA S + Sbjct: 47 LLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSI 106 Query: 58 ALTFMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERL 117 + + +RA +P+I ++L E+ L L QLD+A+++E +S+ LL E L Sbjct: 107 TMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDL 166 Query: 118 FVVGSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGL 177 F+VG+ G+ V + I + L +PS +R V AF+ + ++ EI+ + Sbjct: 167 FLVGTQDC----PGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESI 222 Query: 178 AILMDVVRAGLAATIQPGAAASRLPASV 205 A L + +G+ + P +AA L +V Sbjct: 223 ATLTAAIASGMGVAVLPESAARSLCGAV 250 >Znac [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 305 Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 7/208 (3%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHA--RMSGHVSVGFAPSTA-SVL 57 LL RT GV PTDAG + A+ LR ++A A + +SG VS+GFAP TA S + Sbjct: 47 LLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSI 106 Query: 58 ALTFMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERL 117 + + +RA +P++ ++L E+ L L QLD+A+++E +S+ LL E L Sbjct: 107 TMPLLQAVRAEFPEVVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDL 166 Query: 118 FVVGSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGL 177 F+VG+ G+ V + I + L +PS +R V AF+ + ++ EI+ + Sbjct: 167 FLVGTQDC----PGQSVDVNAIAQMNLFLPSDYSAVRLRVDEAFSLRRLTAKVIGEIESI 222 Query: 178 AILMDVVRAGLAATIQPGAAASRLPASV 205 A L + +G+ + P +AA L +V Sbjct: 223 ATLTAAIASGMGVAVLPESAARSLCGAV 250 >ECs2784 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 305 Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 7/208 (3%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAARAAQHA--RMSGHVSVGFAPSTA-SVL 57 LL RT GV PTDAG + A+ LR ++A A + +SG VS+GFAP TA S + Sbjct: 47 LLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSI 106 Query: 58 ALTFMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERL 117 + + +RA +P++ ++L E+ L L QLD+A+++E +S+ LL E L Sbjct: 107 TMPLLQAVRAEFPEVVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDL 166 Query: 118 FVVGSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGL 177 F+VG+ G+ V + I + L +PS +R V AF+ + ++ EI+ + Sbjct: 167 FLVGTQDC----PGQSVDVNAIAQMNLFLPSDYSAVRLRVDEAFSLRRLTAKVIGEIESI 222 Query: 178 AILMDVVRAGLAATIQPGAAASRLPASV 205 A L + +G+ + P +AA L +V Sbjct: 223 ATLTAAIASGMGVAVLPESAARSLCGAV 250 >AGl1169 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 289 Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 11/256 (4%) Query: 1 LLQRTTTGVVPTDAGLAFWHQAQLALRHVDEAA--RAAQHARMSGHVSVGFAP-STASVL 57 LL R+ GV TDAG A + AQ+ LR +++A AA ++G VSVG P S+A+ L Sbjct: 35 LLIRSQQGVTMTDAGHAVYRHAQIILRQMEQAQVDAAAAGNSLAGRVSVGLVPFSSAATL 94 Query: 58 ALTFMNGLRARYPDIRLHLVESLSGNLATMLNARQLDLAILFETDVAKRLSATPLLDERL 117 ++ + R R+P I +HL ES+ + M+ +L++A++ K + P+L E Sbjct: 95 SVDLLAETRKRHPGILIHLTESVGQTYSQMIMNGRLEMALIHGVGPMKGVRFEPVLSEEF 154 Query: 118 FVVGSHQLIGMPKGKQVRLKDIGALPLVMPSGTHGLRAIVATAFAQAKREPNIVAEIDGL 177 ++V K V + + LP+++P + +R V TAF +++ +VAE++ + Sbjct: 155 YLVAHRNFAIEADLKPVPIGALDGLPMLLPPSYNFVRRAVDTAFTRSRINLKVVAEVEIV 214 Query: 178 AILMDVVRAGLAATIQPGAAASRLPAS-----VVRLVQVADKGVRRRNLLASLPEDELSP 232 L V +GL ATI P A A R+ + V RL+ + L + ++ LS Sbjct: 215 RTLARAVASGLGATIMPKAIADRIVSETGEPLVCRLL---SPRIEETLSLCTSDQNSLSE 271 Query: 233 AALATRIVLKDVVREL 248 A A + +L ++ +L Sbjct: 272 PAFAVKDILVELTEKL 287