BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0294.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv3567c [R] COG1853 Conserved protein/domain typically associate...   126   2e-29
MT3672 [R] COG1853 Conserved protein/domain typically associated...   126   2e-29
RC0191 Non COG                                                        102   2e-22
AGpA322 [R] COG1853 Conserved protein/domain typically associate...   100   2e-21
RP149 [R] COG1853 Conserved protein/domain typically associated ...    99   3e-21

>Rv3567c [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Mtu
           Mycobacterium tuberculosis H37Rv
          Length = 187

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 89/138 (64%)

Query: 1   VITSHIDGEQIGFTCQSFHSVSMSPPLVSFSVMSGSASYPRIRQAGRFAVNILSDEQVEI 60
           VIT+  D   +GF CQSF ++S+ PPLV F     S S+  I  +GRF VN+L+++Q ++
Sbjct: 23  VITTVHDDVPVGFACQSFAALSLEPPLVLFCPTKVSRSWQAIEASGRFCVNVLTEKQKDV 82

Query: 61  SQQFARRGTDKWHGIEWQESPLGNPIIVGSLHWLDCEIYAEHAAGDHLIVIGEVKALDLQ 120
           S +F  +  DK+ GI+W+ S LG+PII GSL ++DC + + H  GDH +V G V++L   
Sbjct: 83  SARFGSKEPDKFAGIDWRPSELGSPIIEGSLAYIDCTVASVHDGGDHFVVFGAVESLSEV 142

Query: 121 EAAATQPLLYFKGQYRNM 138
            A   +PLL+++G Y  +
Sbjct: 143 PAVKPRPLLFYRGDYTGI 160


>MT3672 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family MtC
           Mycobacterium tuberculosis CDC1551
          Length = 187

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 89/138 (64%)

Query: 1   VITSHIDGEQIGFTCQSFHSVSMSPPLVSFSVMSGSASYPRIRQAGRFAVNILSDEQVEI 60
           VIT+  D   +GF CQSF ++S+ PPLV F     S S+  I  +GRF VN+L+++Q ++
Sbjct: 23  VITTVHDDVPVGFACQSFAALSLEPPLVLFCPTKVSRSWQAIEASGRFCVNVLTEKQKDV 82

Query: 61  SQQFARRGTDKWHGIEWQESPLGNPIIVGSLHWLDCEIYAEHAAGDHLIVIGEVKALDLQ 120
           S +F  +  DK+ GI+W+ S LG+PII GSL ++DC + + H  GDH +V G V++L   
Sbjct: 83  SARFGSKEPDKFAGIDWRPSELGSPIIEGSLAYIDCTVASVHDGGDHFVVFGAVESLSEV 142

Query: 121 EAAATQPLLYFKGQYRNM 138
            A   +PLL+++G Y  +
Sbjct: 143 PAVKPRPLLFYRGDYTGI 160


>RC0191 Non COG
          Length = 159

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 87/142 (61%), Gaps = 9/142 (6%)

Query: 1   VITSHIDGEQIGFTCQSFHSVSMSPPLVSFSVMSGSASYPRIRQAGRFAVNILSDEQVEI 60
           +IT++ + E  GFT  S  SVS+ PPL+ F +   S S    +++ +FA++IL++ Q++I
Sbjct: 23  IITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAISILAENQIDI 82

Query: 61  SQQFARRGTDKWHGIEWQESPLGN----PIIVGSLHWLDCEIYAEHAAGDHLIVIGEVKA 116
           S+ FA+  ++K+  I+++   LGN    P+I G+ + ++C  YA + AGDH+I IGEV  
Sbjct: 83  SKHFAKSQSNKFTKIDYE---LGNKTDCPLINGATYHIECNKYASYDAGDHVIFIGEV-- 137

Query: 117 LDLQEAAATQPLLYFKGQYRNM 138
           ++       +PLLYF   Y  +
Sbjct: 138 INTAIKNDLKPLLYFHKSYTKI 159


>AGpA322 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 323

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 1   VITSHIDGEQIGFTCQSFHSVSMSPPLVSFSVMSGSASYPRIRQAGRFAVNILSDEQVEI 60
           V T   DG   G T  SF SVS+ PPL+   V   +ASY    Q   FAVN L + QV++
Sbjct: 27  VTTYDADGNPRGMTANSFTSVSLDPPLLLICVGKSAASYEAFCQTESFAVNFLHEGQVDV 86

Query: 61  SQQFARRGTDKWHGIEWQESPLGNPIIVGSLHWLDCEIYAEHAAGDHLIVIGEVKALDLQ 120
           S  FA +  DK+  +       G PI+  SL W DC ++    AGDH+I+IGEV+A    
Sbjct: 87  SGIFASKTADKFGSVRHHRVHTGAPILADSLSWFDCTVFNRVEAGDHVILIGEVRAFGTS 146

Query: 121 EAAATQPLLYFKGQYRNMR 139
             A   PL + +G+Y +++
Sbjct: 147 PQA---PLGFCRGRYASVK 162


>RP149 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Rpr Rickettsia
           prowazekii
          Length = 161

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 9/142 (6%)

Query: 1   VITSHIDGEQIGFTCQSFHSVSMSPPLVSFSVMSGSASYPRIRQAGRFAVNILSDEQVEI 60
           +IT++ + E  GFT  SF SVS+ P L+ F +   S S    +Q+ +FAV+IL++ Q++I
Sbjct: 23  IITTNCNNELFGFTASSFTSVSLKPSLILFCLNKNSCSINSFKQSDKFAVSILAENQIDI 82

Query: 61  SQQFARRGTDKWHGIEWQESPLGN----PIIVGSLHWLDCEIYAEHAAGDHLIVIGEVKA 116
           S+ FA+   +K+  I ++   LGN    P+I  +   ++C  YA + AGDH+I IGEV  
Sbjct: 83  SKHFAKSQPNKFIKIGYK---LGNKTDCPLINDATCHIECNKYASYNAGDHVIFIGEV-- 137

Query: 117 LDLQEAAATQPLLYFKGQYRNM 138
           ++       +PLLYF   Y  +
Sbjct: 138 INTAIKNNVKPLLYFHKSYTRL 159