BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0288.p (271 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3323 [C] COG0356 F0F1-type ATP synthase, subunit a Rso Ralsto... 362 e-100 NMB1940 [C] COG0356 F0F1-type ATP synthase, subunit a Nme Neisse... 296 3e-80 NMA0513 [C] COG0356 F0F1-type ATP synthase, subunit a NmA Neisse... 296 3e-80 XF1149 [C] COG0356 F0F1-type ATP synthase, subunit a Xfa Xylella... 233 3e-61 VC2770 [C] COG0356 F0F1-type ATP synthase, subunit a Vch Vibrio ... 225 8e-59 >RSc3323 [C] COG0356 F0F1-type ATP synthase, subunit a Rso Ralstonia solanacearum Length = 307 Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/276 (68%), Positives = 220/276 (79%), Gaps = 13/276 (4%) Query: 9 TASEYIVHHLGHFSS--QHQDKIVDFSIINMDTIFWSVFCGVVGCLFMYLAARKATSGVP 66 T S YI HL +F+S Q IVDFS+IN DT+FWSV G +G +F+ +AAR+ T+GVP Sbjct: 32 TPSAYIAEHLQNFNSIGGKQTSIVDFSVINWDTMFWSVLMGAIGLIFLGMAARRVTAGVP 91 Query: 67 GRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPLALTVFVWVALMNSLDFLPVDLVSGIMRL 126 GRFQAFVE+VVEMV+DQ+K I+HGDRT+IAPLAL VFVWV LMN++D +PVD V GI L Sbjct: 92 GRFQAFVELVVEMVDDQAKGIIHGDRTWIAPLALMVFVWVTLMNAVDLIPVDWVFGINHL 151 Query: 127 A---GLEEIHHRIVPTADLNGTLGIALGVLALMLYYSFKIKGAGGFIHELFAAPFGI--W 181 GL HHR V TADLNGT G++ VL LM+YYSFKIKGAGGF+HEL +APFG + Sbjct: 152 LESFGLHVPHHRAVATADLNGTFGMSFAVLLLMIYYSFKIKGAGGFVHELLSAPFGAKWY 211 Query: 182 LAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSAAT------AFGFVGHV 235 LAPFNL+LNIIEF AK VSLGMRLFGNMYAGEL+FLLIALLGS T A GFVGHV Sbjct: 212 LAPFNLILNIIEFLAKAVSLGMRLFGNMYAGELVFLLIALLGSIWTFGADFSALGFVGHV 271 Query: 236 IAGSIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 271 +AG+ WAIFHILIVLLQAFIFMMLTLVY+GQAH+ H Sbjct: 272 VAGAAWAIFHILIVLLQAFIFMMLTLVYIGQAHDHH 307 >NMB1940 [C] COG0356 F0F1-type ATP synthase, subunit a Nme Neisseria meningitidis MC58 Length = 288 Score = 296 bits (759), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/289 (55%), Positives = 202/289 (69%), Gaps = 23/289 (7%) Query: 4 AAHAPTASEYIVHHLGHFSS-------QHQDKIVDFSIINMDTIFWSVFCGVVGCLFMYL 56 A TA++YI HHL +S Q I DFS IN+D +F++V GV+G ++ Sbjct: 2 AGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDAVFFAVLLGVIGSFLLWR 61 Query: 57 AARKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGD--RTFIAPLALTVFVWVALMNSLDF 114 A+KAT+GVPGRFQA VE++ E V+D K+I+H + R +APL LT+FVW+ LMN++D Sbjct: 62 GAKKATAGVPGRFQAAVEILFEFVDDMCKSIIHNEKSRKAVAPLGLTLFVWIFLMNAMDM 121 Query: 115 LPVDLVSGIMRLAGLEEIHH---RIVPTADLNGTLGIALGVLALMLYYSFKIKGAGGFIH 171 LPVDL+ M G+ HH R+VPTADLN TL +A+GVL + +YY+ KIKG GG+ H Sbjct: 122 LPVDLLP--MVWQGITGNHHALLRVVPTADLNTTLALAVGVLLICIYYNIKIKGLGGWFH 179 Query: 172 ELFAAPFGIWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSAATAFG- 230 ELF+APFG LAP N LLN++EF +KTVS GMRLFGNMYAGEL+FLLIALLG A A G Sbjct: 180 ELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMYAGELVFLLIALLGGAWAASGS 239 Query: 231 --------FVGHVIAGSIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 271 FV H+IAG WAIFHIL++ LQAFIFM L VY+GQAH+AH Sbjct: 240 VEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMALAFVYIGQAHDAH 288 >NMA0513 [C] COG0356 F0F1-type ATP synthase, subunit a NmA Neisseria meningitidis Z2491 Length = 288 Score = 296 bits (759), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/289 (55%), Positives = 202/289 (69%), Gaps = 23/289 (7%) Query: 4 AAHAPTASEYIVHHLGHFSS-------QHQDKIVDFSIINMDTIFWSVFCGVVGCLFMYL 56 A TA++YI HHL +S Q I DFS IN+D +F++V GV+G ++ Sbjct: 2 AGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDAVFFAVLLGVIGSFLLWR 61 Query: 57 AARKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGD--RTFIAPLALTVFVWVALMNSLDF 114 A+KAT+GVPGRFQA VE++ E V+D K+I+H + R +APL LT+FVW+ LMN++D Sbjct: 62 GAKKATAGVPGRFQAAVEILFEFVDDMCKSIIHNEKSRKAVAPLGLTLFVWIFLMNAMDM 121 Query: 115 LPVDLVSGIMRLAGLEEIHH---RIVPTADLNGTLGIALGVLALMLYYSFKIKGAGGFIH 171 LPVDL+ M G+ HH R+VPTADLN TL +A+GVL + +YY+ KIKG GG+ H Sbjct: 122 LPVDLLP--MVWQGITGNHHALLRVVPTADLNTTLALAVGVLLICIYYNIKIKGLGGWFH 179 Query: 172 ELFAAPFGIWLAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSAATAFG- 230 ELF+APFG LAP N LLN++EF +KTVS GMRLFGNMYAGEL+FLLIALLG A A G Sbjct: 180 ELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMYAGELVFLLIALLGGAWAASGS 239 Query: 231 --------FVGHVIAGSIWAIFHILIVLLQAFIFMMLTLVYLGQAHEAH 271 FV H+IAG WAIFHIL++ LQAFIFM L VY+GQAH+AH Sbjct: 240 VEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMALAFVYIGQAHDAH 288 >XF1149 [C] COG0356 F0F1-type ATP synthase, subunit a Xfa Xylella fastidiosa 9a5c Length = 265 Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/268 (44%), Positives = 174/268 (64%), Gaps = 4/268 (1%) Query: 4 AAHAPTASEYIVHHLGHFSSQHQDKIVDFSIINMDTIFWSVFCGVVGCLFMYLAARKATS 63 A T + YI HHL + + Q QD F ++++DT+ +V G+V L + KATS Sbjct: 2 AGEEATPTSYIQHHLHNLTFQMQDG-SKFWVLHLDTLIMAVLMGLVMVLAFWSGTCKATS 60 Query: 64 GVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPLALTVFVWVALMNSLDFLPVDLVSGI 123 G+PG++QAFVE+ +E V+ Q K HG + P+A+T+F W+ LMN + +P D ++ Sbjct: 61 GIPGKWQAFVEVCLEFVDRQVKDTYHGPSKLVTPIAITLFFWIFLMNLIKMIPADFIAIP 120 Query: 124 MRLAGLEEIHHRIVPTADLNGTLGIALGVLALMLYYSFKIKGAGGFIHELFAAPFGIWLA 183 AG+ + VPTAD+N TLG+++ V LML++SF+ KG GFI E PFG W+ Sbjct: 121 FSWAGVHA--WKPVPTADVNATLGMSISVFFLMLFFSFRAKGISGFIKEFLTTPFGKWMM 178 Query: 184 PFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSAATAFGFVGHVIAGSIWAI 243 PFNL+LNI+E+ +K +SL MRLFGNM+ GE++FLLI +LG A + G + G W + Sbjct: 179 PFNLVLNIVEWLSKPISLAMRLFGNMFGGEIVFLLIWVLGGAGIS-GMLASSTFGLAWML 237 Query: 244 FHILIVLLQAFIFMMLTLVYLGQAHEAH 271 FH+L++ LQAFIFMML++VYL + ++H Sbjct: 238 FHLLVIPLQAFIFMMLSIVYLSLSEDSH 265 >VC2770 [C] COG0356 F0F1-type ATP synthase, subunit a Vch Vibrio cholerae Length = 270 Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 125/274 (45%), Positives = 172/274 (62%), Gaps = 13/274 (4%) Query: 1 MTAAAHAPTASEYIVHHLGHFSSQHQDKIVD---FSIINMDTIFWSVFCGVVGCLFMYLA 57 M A A T S YI HHL + S+ + + F +++D++F+SV G++ Sbjct: 1 MAAPGEALTPSSYITHHLTNLSTYKLGLVAEESSFWNVHIDSLFFSVLTGLIFLGVFRAV 60 Query: 58 ARKATSGVPGRFQAFVEMVVEMVEDQSKAIVHGDRTFIAPLALTVFVWVALMNSLDFLPV 117 ARKAT+GVPG+ Q VEMVVE V+ K HG IAPLALT+F WV LMN +D +P+ Sbjct: 61 ARKATAGVPGKLQCAVEMVVEFVDKNVKDTFHGRNPLIAPLALTIFCWVFLMNLMDLVPI 120 Query: 118 D-LVSGIMRLAGLEEIHHRIVPTADLNGTLGIALGVLALMLYYSFKIKGAGGFIHELFAA 176 D L G+ + ++VP+AD+N T+ +ALGV ALM+YYS K+KG GGF EL Sbjct: 121 DFLPYPAQHWLGIPYL--KVVPSADVNITMAMALGVFALMIYYSIKVKGLGGFAKELALH 178 Query: 177 PFGIW-LAPFNLLLNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSAATAFGFVGHV 235 PF W + PFNLL+ ++ AK +SLGMRLFGNM+AGE++F+L A + Sbjct: 179 PFNHWIMIPFNLLIEVVSLLAKPLSLGMRLFGNMFAGEVVFIL------CAAMLPWYLQW 232 Query: 236 IAGSIWAIFHILIVLLQAFIFMMLTLVYLGQAHE 269 + WAIFHIL++L+Q+F+FMMLT+VY+ AHE Sbjct: 233 MGSLPWAIFHILVILIQSFVFMMLTIVYMSMAHE 266