BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0282.p (466 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3317 [C] COG0055 F0F1-type ATP synthase, beta subunit Rso Ral... 787 0.0 NMB1934 [C] COG0055 F0F1-type ATP synthase, beta subunit Nme Nei... 780 0.0 NMA0519 [C] COG0055 F0F1-type ATP synthase, beta subunit NmA Nei... 778 0.0 atpD [C] COG0055 F0F1-type ATP synthase, beta subunit Eco Escher... 764 0.0 ZatpD [C] COG0055 F0F1-type ATP synthase, beta subunit EcZ Esche... 764 0.0 >RSc3317 [C] COG0055 F0F1-type ATP synthase, beta subunit Rso Ralstonia solanacearum Length = 467 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/474 (81%), Positives = 417/474 (87%), Gaps = 15/474 (3%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKIYDALKMDGSE--------LTLEVQQQLGDGVVRT 52 M+ G IVQCIGAVVD++FPRDAMPK+YDAL + S L+ EVQQQLGDGVVRT Sbjct: 1 MSIGTIVQCIGAVVDIQFPRDAMPKVYDALVLQDSGEASFAEKGLSFEVQQQLGDGVVRT 60 Query: 53 IALGTSDGLRRGMAIKNTGQPIMVPTGKATLGRIMDVLGNPIDECGPVSHATTASIHRKA 112 IALG+SDGLRRGM + NTG PI VP G TLGRIMDVLG PIDE GP++ +IH+KA Sbjct: 61 IALGSSDGLRRGMPVSNTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIAADEKRAIHQKA 120 Query: 113 PAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGL 172 P +DELSPS +LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAK HSGL Sbjct: 121 PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL 180 Query: 173 SVFAGVGERTREGNDFYHEMADAKVVDLETPENSKVAMVYGQMNEPPGNRLRVALTGLTI 232 SVFAGVGERTREGNDFYHEM D+ V+D KVAMV+GQMNEPPGNRLRVALTGLT+ Sbjct: 181 SVFAGVGERTREGNDFYHEMKDSNVLD-------KVAMVFGQMNEPPGNRLRVALTGLTM 233 Query: 233 AEGFRDEGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGQLQERITSTK 292 AE FRDEG+D+LFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA EMG+LQERITSTK Sbjct: 234 AERFRDEGRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTK 293 Query: 293 TGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDP 352 TGSITSIQAVYVPADDLTDPSPATTF HLDSTVVLSRDIA+LGIYPAVDPLDSTSRQLDP Sbjct: 294 TGSITSIQAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDP 353 Query: 353 QVVGQEHYETARAVQGILQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHV 412 Q+VG EHYE AR VQ LQRYKELRDIIAILGMDEL+PEDKL V RARK+QRFLSQPFHV Sbjct: 354 QIVGTEHYEVARRVQQTLQRYKELRDIIAILGMDELSPEDKLAVGRARKIQRFLSQPFHV 413 Query: 413 AEVFTGSPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKIN 466 AEVFTGSPGKYV LK+TI+GFKM+ GE DHLPEQAFYMVG+I+EA EKAKK+ Sbjct: 414 AEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ 467 >NMB1934 [C] COG0055 F0F1-type ATP synthase, beta subunit Nme Neisseria meningitidis MC58 Length = 465 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/472 (80%), Positives = 418/472 (88%), Gaps = 13/472 (2%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKIYDALKMDGSELTLEVQQQLGDGVVRTIALGTSDG 60 M+ GKIVQ IGAVVDVEFPRD +P++YDALK+D + LTLEVQQ LGDGVVR IA+G+SDG Sbjct: 1 MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRAIAMGSSDG 60 Query: 61 LRRGMAIKNTGQPIMVPTGKATLGRIMDVLGNPIDECGPVSHATTASIHRKAPAYDELSP 120 L+RGM + NTG PI VP GK TLGRI+DVLG P+DE GP+ + +IH+ AP +DELS Sbjct: 61 LKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSS 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 + ELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 TTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMADAKVVDLETPENSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDE- 239 RTREGNDFYHEM D+ V+D KVAMVYGQMNEPPGNRLRVALTGLT+AE FRDE Sbjct: 181 RTREGNDFYHEMKDSNVLD-------KVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEK 233 Query: 240 -----GKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGQLQERITSTKTG 294 G+DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA EMG+LQERITST+TG Sbjct: 234 DENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTG 293 Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQV 354 SITSIQAVYVPADDLTDPSPATTFAHLD+TVVLSRDIASLGIYPAVDPLDSTSRQLDP V Sbjct: 294 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMV 353 Query: 355 VGQEHYETARAVQGILQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAE 414 +GQEHY+ AR VQ LQ+YKELRDIIAILGMDEL+ EDKL V RARK+QRFLSQPFHVAE Sbjct: 354 LGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAE 413 Query: 415 VFTGSPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKIN 466 VFTGSPGKYV+L+DTI GFK I +GE DHLPEQAFYMVG+IEEA+EKAK +N Sbjct: 414 VFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN 465 >NMA0519 [C] COG0055 F0F1-type ATP synthase, beta subunit NmA Neisseria meningitidis Z2491 Length = 465 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/472 (80%), Positives = 418/472 (88%), Gaps = 13/472 (2%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKIYDALKMDGSELTLEVQQQLGDGVVRTIALGTSDG 60 M+ GKIVQ IGAVVDVEFPRD +P++YDALK+D + LTLEVQQ LGDGVVRTIA+G+SDG Sbjct: 1 MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDG 60 Query: 61 LRRGMAIKNTGQPIMVPTGKATLGRIMDVLGNPIDECGPVSHATTASIHRKAPAYDELSP 120 L+RGM + NTG PI VP GK TLGRI+DVLG P+DE GP+ + +IH+ AP +DELS Sbjct: 61 LKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSS 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 + ELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 TTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMADAKVVDLETPENSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDE- 239 RTREGNDFYHEM D+ V+D KVAMVYGQMNEPPGNRLRVALTGLT+AE FRDE Sbjct: 181 RTREGNDFYHEMKDSNVLD-------KVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEK 233 Query: 240 -----GKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGQLQERITSTKTG 294 G+DVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA EMG LQERITST+TG Sbjct: 234 DENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGCLQERITSTQTG 293 Query: 295 SITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQV 354 SITSIQAVYVPADDLTDPSPATTFAHLD+TVVLSRDIASLGIYPAVDPLDSTSRQLDP V Sbjct: 294 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMV 353 Query: 355 VGQEHYETARAVQGILQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAE 414 +GQEHY+ AR VQ LQ+YKELRDIIAILGMDEL+ EDKL V RARK+QRFLSQPFHVAE Sbjct: 354 LGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAE 413 Query: 415 VFTGSPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKIN 466 VFTGSPGKYV+L+DTI GFK I +GE D+LPEQAFYMVG+IEEA+EKAK +N Sbjct: 414 VFTGSPGKYVALRDTIAGFKAILNGEYDYLPEQAFYMVGSIEEAVEKAKTLN 465 >atpD [C] COG0055 F0F1-type ATP synthase, beta subunit Eco Escherichia coli K12 Length = 460 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/467 (80%), Positives = 416/467 (89%), Gaps = 9/467 (1%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKIYDALKM-DGSE-LTLEVQQQLGDGVVRTIALGTS 58 MA GKIVQ IGAVVDVEFP+DA+P++YDAL++ +G+E L LEVQQQLG G+VRTIA+G+S Sbjct: 1 MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSS 60 Query: 59 DGLRRGMAIKNTGQPIMVPTGKATLGRIMDVLGNPIDECGPVSHATTASIHRKAPAYDEL 118 DGLRRG+ +K+ PI VP GKATLGRIM+VLG P+D G + +IHR AP+Y+EL Sbjct: 61 DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEEL 120 Query: 119 SPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGV 178 S SQELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELI NIA HSG SVFAGV Sbjct: 121 SNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 180 Query: 179 GERTREGNDFYHEMADAKVVDLETPENSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRD 238 GERTREGNDFYHEM D+ V+D KV++VYGQMNEPPGNRLRVALTGLT+AE FRD Sbjct: 181 GERTREGNDFYHEMTDSNVID-------KVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 233 Query: 239 EGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGQLQERITSTKTGSITS 298 EG+DVL FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA EMG LQERITSTKTGSITS Sbjct: 234 EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITS 293 Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQE 358 +QAVYVPADDLTDPSPATTFAHLD+TVVLSR IASLGIYPAVDPLDSTSRQLDP VVGQE Sbjct: 294 VQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQE 353 Query: 359 HYETARAVQGILQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAEVFTG 418 HY+TAR VQ ILQRY+EL+DIIAILGMDEL+ EDKL+VARARK+QRFLSQPF VAEVFTG Sbjct: 354 HYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTG 413 Query: 419 SPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKI 465 SPGKYVSLKDTI+GFK I GE DHLPEQAFYMVG+IEEA+EKAKK+ Sbjct: 414 SPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL 460 >ZatpD [C] COG0055 F0F1-type ATP synthase, beta subunit EcZ Escherichia coli O157:H7 EDL933 Length = 460 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/467 (80%), Positives = 416/467 (89%), Gaps = 9/467 (1%) Query: 1 MADGKIVQCIGAVVDVEFPRDAMPKIYDALKM-DGSE-LTLEVQQQLGDGVVRTIALGTS 58 MA GKIVQ IGAVVDVEFP+DA+P++YDAL++ +G+E L LEVQQQLG G+VRTIA+G+S Sbjct: 1 MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSS 60 Query: 59 DGLRRGMAIKNTGQPIMVPTGKATLGRIMDVLGNPIDECGPVSHATTASIHRKAPAYDEL 118 DGLRRG+ +K+ PI VP GKATLGRIM+VLG P+D G + +IHR AP+Y+EL Sbjct: 61 DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEEL 120 Query: 119 SPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGV 178 S SQELLETGIKVIDL+CPFAKGGKVGLFGGAGVGKTVNMMELI NIA HSG SVFAGV Sbjct: 121 SNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 180 Query: 179 GERTREGNDFYHEMADAKVVDLETPENSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRD 238 GERTREGNDFYHEM D+ V+D KV++VYGQMNEPPGNRLRVALTGLT+AE FRD Sbjct: 181 GERTREGNDFYHEMTDSNVID-------KVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 233 Query: 239 EGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGQLQERITSTKTGSITS 298 EG+DVL FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA EMG LQERITSTKTGSITS Sbjct: 234 EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITS 293 Query: 299 IQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQE 358 +QAVYVPADDLTDPSPATTFAHLD+TVVLSR IASLGIYPAVDPLDSTSRQLDP VVGQE Sbjct: 294 VQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQE 353 Query: 359 HYETARAVQGILQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAEVFTG 418 HY+TAR VQ ILQRY+EL+DIIAILGMDEL+ EDKL+VARARK+QRFLSQPF VAEVFTG Sbjct: 354 HYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTG 413 Query: 419 SPGKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKI 465 SPGKYVSLKDTI+GFK I GE DHLPEQAFYMVG+IEEA+EKAKK+ Sbjct: 414 SPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL 460