BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0276.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3475 [ET] COG0834 ABC-type amino acid transport/signal transdu... 284 1e-76 RSc2512 [ET] COG0834 ABC-type amino acid transport/signal transd... 281 7e-76 YPO3343 [ET] COG0834 ABC-type amino acid transport/signal transd... 143 3e-34 PA5076 [ET] COG0834 ABC-type amino acid transport/signal transdu... 107 2e-23 SP0112 [ET] COG0834 ABC-type amino acid transport/signal transdu... 83 6e-16 >PA3475 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 268 Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 129/233 (55%), Positives = 176/233 (75%), Gaps = 2/233 (0%) Query: 29 SSRLDEVIKSGKLRVCMTGDYKPFTYFKTDNTFEGMDVDLAQSLAKSLGVEVQLVKTTWT 88 SRLD +++SG LRV TGDYKPF+Y + + G DVD+AQ LA+SLG ++ +V T+W Sbjct: 27 ESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWP 86 Query: 89 NLMTDFLA-KCDIAMGGVSVTLDRQKKAAFAVSHMVDGKSPIVRCADVAKFQTLEMIDKP 147 NLM DF + DIAM G+S+ L+RQ++A F++ ++ DGK+PI C++ A+FQTLE ID+P Sbjct: 87 NLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQP 146 Query: 148 TTRAIFNPGGTNERFARANYKQAQLILHPDNVTIFQQIIDGKADIMVTDASETLWQAKQH 207 AI NPGGTNE+FARAN K+A++++HPDNVTIFQQI+DGKAD+M+TDA E Q++ H Sbjct: 147 GVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLH 206 Query: 208 PELCPVHPDQPLQFSEKAFMLPRADVAFKEYVDAWMHLQKATGDYDRVLNKWL 260 PELC VHP QP F+EKA++LPR D AFK YVD W+H+ + +G + + WL Sbjct: 207 PELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL 258 >RSc2512 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 140/250 (56%), Positives = 183/250 (73%), Gaps = 6/250 (2%) Query: 14 LLCAGMAMQTAGAAESSRLDEVIKSGKLRVCMTGDYKPFTYFKT--DNTFEGMDVDLAQS 71 LLCA +A A A ++RLDE++ G LRV TGDYKPF+Y KT D F G+DVD+ + Sbjct: 12 LLCACVAA-PALAQATNRLDEILARGTLRVGSTGDYKPFSY-KTPGDGRFIGLDVDMGER 69 Query: 72 LAKSLGVEVQLVKTTWTNLMTDFLA-KCDIAMGGVSVTLDRQKKAAFAVSHMVDGKSPIV 130 LAK+LGV++++V TTW+ LM DF + DIAM G+SVTL+RQKKA +++ + DGK+PI Sbjct: 70 LAKALGVKLEVVPTTWSTLMRDFGEDRFDIAMSGISVTLERQKKAFYSIPYQRDGKTPIA 129 Query: 131 RCADVAKFQTLEMIDKPTTRAIFNPGGTNERFARANYKQAQLILHPDNVTIFQQIIDGKA 190 RC + KFQTLE ID+P RA+ NPGGTNE+FAR + KQAQ+ ++PDNVTIF +II G+A Sbjct: 130 RCENQDKFQTLEQIDRPGVRAVVNPGGTNEKFAREHLKQAQIRVYPDNVTIFNEIIAGRA 189 Query: 191 DIMVTDASETLWQAKQHPELCPVHPDQPLQFSEKAFMLPRADVAFKEYVDAWMHLQKATG 250 D+M+TDA ET Q K HPELC VHPD P FSEKA++LPR DV FK +VD W+ +G Sbjct: 190 DLMMTDAVETRLQQKLHPELCAVHPDAPFDFSEKAYLLPR-DVVFKNFVDQWLRQTMESG 248 Query: 251 DYDRVLNKWL 260 ++ R + WL Sbjct: 249 EFARRFDAWL 258 >YPO3343 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 256 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 118/215 (54%), Gaps = 7/215 (3%) Query: 34 EVIKSGKLRVCMTGDYKPFTYFKTDNTFEGMDVDLAQSLAKSLGVEVQLVKTTWTNLMTD 93 E+ +SG+LR+ + GDY P + G DVD+A + + L ++V V T+W L D Sbjct: 28 EIKQSGELRIGVPGDYAPLAFHDKQGQLIGYDVDMANAFGEDLKLKVNFVSTSWPTLSDD 87 Query: 94 FLA-KCDIAMGGVSVTLDRQKKAAFAVSHMV--DGKSPIVRCADVAKFQTLEMIDKPTTR 150 A K DIAMGGV+ T R+ A FA+SH V +GK + C V KF TL+ ID+ + Sbjct: 88 LAADKFDIAMGGVTATPGRE--AQFALSHAVVKNGKIALTHCQKVNKFPTLDAIDRQNVK 145 Query: 151 AIFNPGGTNERFARANYKQAQLILHPDNVTIFQQIIDGKADIMVTDASET-LWQAKQHPE 209 I NPGGTN+ F AN KQAQ+I DNV Q I + ADIM TD E +Q+K+ Sbjct: 146 VIVNPGGTNQSFVDANIKQAQIIRTKDNVANLQGIRNKSADIMFTDLIEGDYYQSKEPGV 205 Query: 210 LCPVHPDQ-PLQFSEKAFMLPRADVAFKEYVDAWM 243 C P+ S K +M+ + + E V+ W+ Sbjct: 206 FCVATPEVLAGTGSYKVYMMAKDNQPLLEEVNQWL 240 >PA5076 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 266 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 6/261 (2%) Query: 1 MKKYFRKWLLPLTLLCAGMAMQTAGAAESSRLDEVIKSGKLRVCMTGDYKPFTYFKTDNT 60 MKKY +L + L ++Q AGA E + +K G LRV M Y PF Sbjct: 1 MKKYLASLVLGVCALVGVASVQAAGAVE-----DAVKRGTLRVGMDPTYMPFEMTNKRGQ 55 Query: 61 FEGMDVDLAQSLAKSLGVEVQLVKTTWTNLMTDFLA-KCDIAMGGVSVTLDRQKKAAFAV 119 G +VDL +++AKS+GV+++LV T++ ++ L K D+ G+++T +R + F+ Sbjct: 56 IIGFEVDLLKAMAKSMGVKLELVSTSYDGIIPALLTDKFDMIGSGMTLTQERNLRLNFSE 115 Query: 120 SHMVDGKSPIVRCADVAKFQTLEMIDKPTTRAIFNPGGTNERFARANYKQAQLILHPDNV 179 +V G++ +VR K ++ + ++ P G T E AR +A+ + Sbjct: 116 PFIVVGQTLLVRKELEGKIKSYKDLNDPQYSITSKIGTTGEIVARKLISKAKYHGFDNEP 175 Query: 180 TIFQQIIDGKADIMVTDASETLWQAKQHPELCPVHPDQPLQFSEKAFMLPRADVAFKEYV 239 +++GKAD + D+ + + V+ DQP + AF L + D ++ Sbjct: 176 EAVMDVVNGKADAFIYDSPYNVVAVSKFGAGKLVYLDQPFTYEPLAFGLKKGDYDSINFI 235 Query: 240 DAWMHLQKATGDYDRVLNKWL 260 + ++H + G Y R+ +KW Sbjct: 236 NNFLHQIREDGTYQRIHDKWF 256 >SP0112 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Spn Streptococcus pneumoniae TIGR4 Length = 268 Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 17/258 (6%) Query: 5 FRKWLLPLTLLCAGMAMQTAGAAESSRLDEVIKS-GKLRVCMTGDYKPFTYFKT---DNT 60 F +LPL C+ Q+AG E IKS GKL V + D+ PF Y K N Sbjct: 12 FGLVMLPLLFACSNN--QSAGI-------EAIKSKGKLVVALNPDFAPFEYQKVVDGKNQ 62 Query: 61 FEGMDVDLAQSLAKSLGVEVQLVKTTWTNLMTDFLA-KCDIAMGGVSVTLDRQKKAAFAV 119 G D++LA+++A LGVE++L ++ N++ + K D+A+ GVS T +R K F++ Sbjct: 63 IVGSDIELAKAIATKLGVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSI 122 Query: 120 SHMVDGKSPIVRCADVAKFQTLEMIDKPTTRAIFNPGGTNERFARANYKQAQLILHPDNV 179 + IV+ +D+ +Q++ + + A G E A+ + + L+ P N Sbjct: 123 PYYTAKNKLIVKKSDLTTYQSVNDLAQKKVGA--QKGSIQETMAKDLLQNSSLVSLPKNG 180 Query: 180 TIFQQIIDGKADIMVTDASETLWQAKQHPELCPVHPD-QPLQFSEKAFMLPRADVAFKEY 238 + + G+ D ++ + + + +P+L + + Q A + + KE Sbjct: 181 NLITDLKSGQVDAVIFEEPVSKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKKLKEA 240 Query: 239 VDAWMHLQKATGDYDRVL 256 VD + K +G+ D+++ Sbjct: 241 VDKTIQKLKESGELDKLI 258