BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0265.p         (237 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport...    67   5e-11
RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport...    60   3e-09

>RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 391

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 36  FKIGGVVSLSGTYGIFGEDMRKGVEVAIAE---RGGKVLGKPIQVTWEDDETKPQPAVQK 92
            +IG V  ++G Y    ++   G  +A+A+   RGG +LG+PI++  ED        VQK
Sbjct: 40  LRIGMVDPMTGVYAAVAQNEVTGARLAVAQINARGG-ILGRPIELLVEDSANDVGTGVQK 98

Query: 93  ATRLIA-DGSQMIFGAVSSASTIAIMNITKQRKIPHLVTMSADDKITTPGASRYTFRTSN 151
           A +LI  D    + G V+S    AI  ++ ++K+ H+V+    D IT        +R  N
Sbjct: 99  ARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCN 158

Query: 152 TLGMEQRMALGYSKEQKLKRVYGVTADY 179
           T  ME          +  K+ + +T DY
Sbjct: 159 TTSMEANAVANLLFSKYGKKWHFITPDY 186


>RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 402

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 5/161 (3%)

Query: 23  MGASAAHA-ADPDVFKIGGVVSLSGTYG-IFGEDMRKGVEVAIAERGGKVLGKPIQVTWE 80
           + AS AHA    D  KIG +  LSG Y  I G+   + V++AI + GGKVLGKPI++   
Sbjct: 17  LAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGKVLGKPIELVTA 76

Query: 81  DDETKPQPAVQKATRLI-ADGSQMIFGAVSSASTIAIMNITKQRKIPHLVTMSADDKITT 139
           D + K   A  KA   +   G  M+ G  +SA+++A+  +  ++K   +   +   ++T 
Sbjct: 77  DHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGIGAGTARLTN 136

Query: 140 PGASRYTFRTS-NTLGMEQRMALGYSKEQKLKRVYGVTADY 179
              + YT   + +T+ + +       K Q  K  + +TADY
Sbjct: 137 EECTPYTIHYAYDTVALAKGTGSAVVK-QGGKSWFFLTADY 176