BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0263.p (274 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport... 136 5e-32 AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport... 134 3e-31 BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transpo... 133 4e-31 BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transpo... 132 1e-30 Cgl0907 [E] COG0559 Branched-chain amino acid ABC-type transport... 129 5e-30 >RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 315 Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 139/251 (55%), Gaps = 13/251 (5%) Query: 3 TIIIGLSLGMLLFLLASGLTLIFGMLGVINFAHGALYMLGTYLAYDITLRTGSFVLGVIG 62 ++ G+S G+LLF+L+SGLTLIF M+GV+NFAH + YMLG Y AY ++ G F +I Sbjct: 7 NLLNGISYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMLGAYFAYVVSGYLG-FWAALIV 65 Query: 63 ATLIVAIAGIAMERYALRKLYGRPHFYQLILTFGFILVISEAAKFFWGMGYKEAPMPTLL 122 A L+V G +ER+ LR ++ H +L+ TFG +I E K WG+ +P L Sbjct: 66 APLLVGALGALVERFGLRTVHRYGHVAELLFTFGLAYLIEEGVKLVWGLPAVPYRVPEAL 125 Query: 123 AGAV-GLFGSTIPVYRLFVIGFGMLVSFGLFAALEKSTFGMLVRAASSDSEMVRTLGLPA 181 G + LF S+ P YR F++ +L+ G+F L ++ G++++AA + +MV LG Sbjct: 126 DGPLFTLFTSSFPKYRAFMMLVSLLMLVGIFLLLTRTRIGLVIQAALTHPDMVEALGHNV 185 Query: 182 SLIRTAVFGLGAGL-----------FPIEPGMAGNTIIDCFVVVILGGLGNIRGVVAAAV 230 + VFG G L F EP MA FVV ++GG+G++ G A++ Sbjct: 186 PRVFMLVFGGGCALAGLAGVIGGNAFVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFIASL 245 Query: 231 LIGMVRAVGYT 241 LIG ++ T Sbjct: 246 LIGCIQTFAVT 256 >AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 12/268 (4%) Query: 16 LLASGLTLIFGMLGVINFAHGALYMLGTYLAYDITLRTG-SFVLGVIGATLIVAIAGIAM 74 LL+ GL +IFG+L VINFAHGA YMLG ++A+ G +F + +I L+VA+ G + Sbjct: 28 LLSLGLAVIFGLLRVINFAHGAQYMLGAFVAFLGLQYFGINFWMALIVTPLVVALFGAIV 87 Query: 75 ERYALRKLYGRPHFYQLILTFGFILVISEAAKFFWGMGYKEAPMPTLLAGAVGLFGSTIP 134 ER+ L +LY Y L+ TFG LV+ ++ +G + +P LAG L +P Sbjct: 88 ERFMLSRLYDLDPLYGLLFTFGLALVVEGTFRWLYGAAGQPYSVPRELAGGTNLGFMFLP 147 Query: 135 VYRLFVIGFGMLVSFGLFAALEKSTFGMLVRAASSDSEMVRTLGLPASLIRTAVFGLGAG 194 YR FV+ ++ +A +EK+ G +RAA+ + +V+ G+ ++ T + LGAG Sbjct: 148 NYRAFVVVISLVACIATWALIEKTRLGSYLRAATENPTLVQAFGINVPVLLTLTYALGAG 207 Query: 195 L-----------FPIEPGMAGNTIIDCFVVVILGGLGNIRGVVAAAVLIGMVRAVGYTFM 243 L + + P M N II F VV++GG+G+I G + ++G+ + F Sbjct: 208 LAGFTGVLAAPIYQVSPLMGTNLIIVVFAVVVVGGMGSIMGAIVTGYMLGIAEGLTKVFY 267 Query: 244 PSWVDVMTFALLILTLLTRPQGLFSRPS 271 P +++ F ++ LL RP GLF + + Sbjct: 268 PEASNIVIFVIMAFVLLIRPAGLFGKDA 295 >BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 289 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 155/289 (53%), Gaps = 20/289 (6%) Query: 1 MSTIIIGLSLGMLLFLLASGLTLIFGMLGVINFAHGALYMLG----TYLAYDITLRTG-S 55 +S + L+ GM+LF+++ GL++ G++ V+N AHGA M+G +Y A + L G + Sbjct: 5 LSIAVDALAYGMVLFVISIGLSVTMGLMRVVNLAHGAFAMIGGYFASYAAQQLGLNYGFA 64 Query: 56 FVLGVIGATLIVAIAGIAMERYALRKLYGRPHFYQLILTFGFILVISEAAKFFWGMGYKE 115 ++ V+G T+I+A+ +ER R++YG P Q+++T G I + +G K Sbjct: 65 IIIAVVG-TMIIAVP---VERLLYRRIYGAPELTQVLMTIGVTFCIIGITNYIFGPTLKT 120 Query: 116 APMPTLLAGAVGLFGSTIPVYRLFVIGFGMLVSFGLFAALEKSTFGMLVRAASSDSEMVR 175 P+P +L G+V L I +R+F IG G+ V+ GL+ A+E++ FG+ +RAA ++ M Sbjct: 121 IPLPEMLRGSVDLGFRAIAKHRIFAIGCGLAVAVGLWYAVERTAFGVKLRAAVDNANMAA 180 Query: 176 TLGLPASLIRTAVFGL-----------GAGLFPIEPGMAGNTIIDCFVVVILGGLGNIRG 224 LG+ ++ F L GA L P+EP A ++ VVV +G G+I G Sbjct: 181 ALGVRTEIVYAVSFALAIGLAAFGGVVGAELLPVEPYYALRYMVTFLVVVSVGRAGSIPG 240 Query: 225 VVAAAVLIGMVRAVGYTFMPSWVDVMTFALLILTLLTRPQGLFSRPSRS 273 + A +L+G + G P + + + +I+ + P+GL R +R Sbjct: 241 ALVACLLLGAIDTTGRYLAPEYGEFFFYLAVIVIVTLFPRGLAGRLARK 289 >BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 295 Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 12/283 (4%) Query: 1 MSTIIIGLSLGMLLFLLASGLTLIFGMLGVINFAHGALYMLGTYLAYDITLRTG-SFVLG 59 + +++GL G +L+ GL +IFG+L +INFAHGA YMLG ++ Y + G S+ Sbjct: 13 LGQLLVGLINGSFYAMLSLGLAIIFGLLRIINFAHGAQYMLGAFVGYLLLSWLGISYWPA 72 Query: 60 VIGATLIVAIAGIAMERYALRKLYGRPHFYQLILTFGFILVISEAAKFFWGMGYKEAPMP 119 ++ A LIV + G +ER AL +LY Y L+ TFG LVI ++++G + +P Sbjct: 73 LVLAPLIVGLGGAIIERVALSRLYNLDPLYGLLFTFGLALVIEGTFRYYYGAAGQPYAVP 132 Query: 120 TLLAGAVGLFGSTIPVYRLFVIGFGMLVSFGLFAALEKSTFGMLVRAASSDSEMVRTLGL 179 LAG L +P YR +V+ + V G + +EK+ G +RAA+ + +V+ G+ Sbjct: 133 PSLAGGRNLGFMFLPNYRAWVVVASLFVCLGTWLLIEKTKLGAYLRAATENPTLVKAFGI 192 Query: 180 PASLIRTAVFGLGAGL-----------FPIEPGMAGNTIIDCFVVVILGGLGNIRGVVAA 228 L+ T + LG+ L + + P M N II F VV++GG+G+I G + Sbjct: 193 NVPLLLTFTYALGSALAGLAGIMAAPIYQVSPLMGSNIIIVVFAVVVVGGMGSILGAIIT 252 Query: 229 AVLIGMVRAVGYTFMPSWVDVMTFALLILTLLTRPQGLFSRPS 271 ++G+ + F P ++ F ++ + LL RP GLF + + Sbjct: 253 GYVLGIAEGLTKVFYPEASSIVVFVIMAIVLLVRPAGLFGKEA 295 >Cgl0907 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Cgl Corynebacterium glutamicum Length = 294 Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 149/289 (51%), Gaps = 17/289 (5%) Query: 1 MSTIIIGLSLGMLLFLLASGLTLIFGMLGVINFAHGALYMLGTYLAYDITLRTG----SF 56 ++ ++ GLS+G +L L+A GL+L FG +GVIN AHG M+G Y AY + L G S Sbjct: 5 LNQLVAGLSVGSVLLLVAVGLSLTFGQMGVINMAHGEFIMVGAYTAYVVQLVVGSAGLSL 64 Query: 57 VLGVIGATLIVAIAGIAMERYALRKLYGRPHFYQLILTFGFILVISEAAKFFWGMGYKEA 116 ++ + A +I + G+ +E++ L+ LY RP L+ TFG L++ + A+ +G + Sbjct: 65 LISIPLAFIIGGLFGVLLEQFLLKYLYHRP-LDTLLATFGVGLILQQLARNIFGAPAVDV 123 Query: 117 PMPTLLAGAVGLFGSTIPVYRLFVIGFGMLVSFGLFAALEKSTFGMLVRAASSDSEMVRT 176 P L G V + G +P RLF++ + L L ++ +G +RA + ++ T Sbjct: 124 RAPEFLRGNVEVLGVLVPTARLFILALAIASVTALAVFLNRTAWGRRIRAVVLNRDLAET 183 Query: 177 LGLPASLIRTAVFGLGAGLFPIE-----------PGMAGNTIIDCFVVVILGGLGNIRGV 225 G+ F +G+GL I P + N I+D F+VV GG+G ++G Sbjct: 184 AGIDTRATDRMTFFVGSGLAGIAGVAITLIGATGPTIGQNYIVDAFLVVAAGGIGRVKGA 243 Query: 226 VAAAVLIGMVRA-VGYTFMPSWVDVMTFALLILTLLTRPQGLFSRPSRS 273 V A ++G+ +A V YT S + ++ L RPQGLF +RS Sbjct: 244 VIMAFVLGITQAFVEYTTGASIAKFIVLIAVVAFLQFRPQGLFQTQTRS 292