BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0250.p         (118 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1221 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...   171   6e-43
YPO0160 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    99   3e-21
STM3475 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    97   1e-20
nirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and r...    96   1e-20
ZnirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and ...    96   1e-20

>RSp1221 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Rso Ralstonia
           solanacearum
          Length = 113

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 94/111 (84%), Gaps = 2/111 (1%)

Query: 6   QIEHWIEVCDIADIVPNTGVCALIGGEQVAVFHVIEGGNSETRVFAIGNYDPNADASVLS 65
           Q  HW  +C + DIVPNTGVCAL+GG Q+AVFHV   G++  RV+AIGNYDPNADA+VLS
Sbjct: 2   QANHWTAICALDDIVPNTGVCALVGGAQIAVFHV--AGDAPRRVYAIGNYDPNADAAVLS 59

Query: 66  RGLVGSIGERIVVASPIYKQHFDLQTGECIEAPEHSVSAYPARLEHGKVWV 116
           RGLVG++GERIVVASPIYKQHFDL TGEC+EAP +SV AY A++E GKVW+
Sbjct: 60  RGLVGNLGERIVVASPIYKQHFDLATGECLEAPANSVPAYAAKVEDGKVWI 110


>YPO0160 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Ype Yersinia pestis
          Length = 108

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 69/112 (61%), Gaps = 4/112 (3%)

Query: 7   IEHWIEVCDIADIVPNTGVCALIGGEQVAVFHVIEGGNSETRVFAIGNYDPNADASVLSR 66
           +  WI +C + DI+P +GVC LI  +QVAVF       ++ +VFAI N DP A ASVLSR
Sbjct: 1   MSQWIPLCPLNDILPGSGVCGLIKQQQVAVFR----PYADEQVFAISNIDPFAQASVLSR 56

Query: 67  GLVGSIGERIVVASPIYKQHFDLQTGECIEAPEHSVSAYPARLEHGKVWVGA 118
           GL+      + VASP+ KQHF L+ G C+E  + SV+ Y  R+  G V V A
Sbjct: 57  GLIAEHQGELWVASPLKKQHFRLRDGFCLEDEDRSVTHYDVRVRDGMVQVNA 108


>STM3475 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Sty Salmonella
           typhimurium LT2
          Length = 108

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 7   IEHWIEVCDIADIVPNTGVCALIGGEQVAVFHVIEGGNSETRVFAIGNYDPNADASVLSR 66
           +  W  +C I DI+P TGVCAL GGEQVA+F          +VFAI N DP  +ASVLSR
Sbjct: 1   MSQWQNICKIDDILPGTGVCALSGGEQVAIFRPYHS----DQVFAISNIDPFFEASVLSR 56

Query: 67  GLVGSIGERIVVASPIYKQHFDLQTGECIEAPEHSVSAYPARLEHGKV 114
           GL+      + VASP+ KQ F L  G C+E  + SV  Y AR++ G V
Sbjct: 57  GLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYDARVKDGVV 104


>nirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Eco Escherichia coli K12
          Length = 108

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 7   IEHWIEVCDIADIVPNTGVCALIGGEQVAVFHVIEGGNSETRVFAIGNYDPNADASVLSR 66
           +  W ++C I DI+P TGVCAL+G EQVA+F          +VFAI N DP  ++SVLSR
Sbjct: 1   MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHS----DQVFAISNIDPFFESSVLSR 56

Query: 67  GLVGSIGERIVVASPIYKQHFDLQTGECIEAPEHSVSAYPARLEHGKV 114
           GL+      + VASP+ KQ F L  G C+E  + SV  Y AR++ G V
Sbjct: 57  GLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVV 104


>ZnirD [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases EcZ Escherichia coli
           O157:H7 EDL933
          Length = 108

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 7   IEHWIEVCDIADIVPNTGVCALIGGEQVAVFHVIEGGNSETRVFAIGNYDPNADASVLSR 66
           +  W ++C I DI+P TGVCAL+G EQVA+F          +VFAI N DP  ++SVLSR
Sbjct: 1   MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHS----DQVFAISNIDPFFESSVLSR 56

Query: 67  GLVGSIGERIVVASPIYKQHFDLQTGECIEAPEHSVSAYPARLEHGKV 114
           GL+      + VASP+ KQ F L  G C+E  + SV  Y AR++ G V
Sbjct: 57  GLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVV 104