BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0223.p         (296 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2185 [G] COG1803 Methylglyoxal synthase Rso Ralstonia solanac...    69   2e-11
BH1681 [G] COG1803 Methylglyoxal synthase Bha Bacillus halodurans      67   7e-11
AGc311 [G] COG1803 Methylglyoxal synthase Atu Agrobacterium tume...    66   9e-11
mgsA [G] COG1803 Methylglyoxal synthase Eco Escherichia coli K12       65   2e-10
ZmgsA [G] COG1803 Methylglyoxal synthase EcZ Escherichia coli O1...    65   2e-10

>RSc2185 [G] COG1803 Methylglyoxal synthase Rso Ralstonia solanacearum
          Length = 135

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 58/108 (53%), Gaps = 15/108 (13%)

Query: 163 IALIAHDSMKARMLALAERHFDVLDSFGFRC---ATGTTGGLLNELAVKIKGEAGRNWVK 219
           IALIAHD  K  M+A A+ H     +F  RC   ATGTTGG       +++ E G + V+
Sbjct: 7   IALIAHDHKKDDMIAFAQTH----KAFLMRCDLLATGTTGG-------RLQDEVGLS-VQ 54

Query: 220 PFLSGPLGGDAQIAELILEHECRRVLFLEDPHVARQHEADIQLLERAA 267
             LSGP GGD QI   + E     V+FL DP   + HE DI  L RA 
Sbjct: 55  RMLSGPWGGDLQIGAQLAEGRVDAVIFLRDPMTPQPHEPDINALVRAC 102


>BH1681 [G] COG1803 Methylglyoxal synthase Bha Bacillus halodurans
          Length = 138

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 163 IALIAHDSMKARMLALAERHFDVLDSFGFRCATGTTGGLLNELAVKIKGEAGRNWVKPFL 222
           IALIAHD  K  M+     + DVL       ATGTTG  + E        A +  VK F 
Sbjct: 3   IALIAHDKKKDEMVQFTIAYKDVLKDHEL-YATGTTGMRIME--------AAQLPVKRFK 53

Query: 223 SGPLGGDAQIAELILEHECRRVLFLEDPHVARQHEADIQLLER 265
           SGPLGGD QI  L+ E++   ++FL DP  A+ HE D+  L R
Sbjct: 54  SGPLGGDQQIGALVAENKFDLIIFLRDPLTAQPHEPDVTALVR 96


>AGc311 [G] COG1803 Methylglyoxal synthase Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 127

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 163 IALIAHDSMKARMLALAERHFDVLDSFGFRCATGTTGGLLNELAVKIKGEAGRNWVKPFL 222
           IALIAHD  K  M   A  H  VL SF    ATGTTGG + E    ++       V    
Sbjct: 7   IALIAHDEKKDDMADFARHHQKVLASFRI-VATGTTGGRVQEACPGLE-------VIRLK 58

Query: 223 SGPLGGDAQIAELILEHECRRVLFLEDPHVARQHEADIQLLERAARTVTD 272
           SGPLGGD QI  +I   E   ++F  DP  A  H+ D++ L R A TV D
Sbjct: 59  SGPLGGDQQIGAMIATGEVDMLIFFTDPLTAMPHDVDVKALTRLA-TVYD 107


>mgsA [G] COG1803 Methylglyoxal synthase Eco Escherichia coli K12
          Length = 155

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 159 ADEGIALIAHDSMKARMLALAERHFDVLDSFGFRCATGTTGGLLNELAVKIKGEAGRNWV 218
           A + IAL+AHD  K  +++  ERH  +L+      ATGTTG L       I    G N V
Sbjct: 13  ARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLY-ATGTTGNL-------ISRATGMN-V 63

Query: 219 KPFLSGPLGGDAQIAELILEHECRRVLFLEDPHVARQHEADIQLLERAA 267
              LSGP+GGD Q+  LI E +   ++F  DP  A  H+ D++ L R A
Sbjct: 64  NAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLA 112


>ZmgsA [G] COG1803 Methylglyoxal synthase EcZ Escherichia coli O157:H7
           EDL933
          Length = 155

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 159 ADEGIALIAHDSMKARMLALAERHFDVLDSFGFRCATGTTGGLLNELAVKIKGEAGRNWV 218
           A + IAL+AHD  K  +++  ERH  +L+      ATGTTG L       I    G N V
Sbjct: 13  ARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLY-ATGTTGNL-------ISRATGMN-V 63

Query: 219 KPFLSGPLGGDAQIAELILEHECRRVLFLEDPHVARQHEADIQLLERAA 267
              LSGP+GGD Q+  LI E +   ++F  DP  A  H+ D++ L R A
Sbjct: 64  NAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLA 112