BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0207.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1333 [D] COG0239 Integral membrane protein possibly involved ...   118   3e-27
PM1630 [D] COG0239 Integral membrane protein possibly involved i...    90   2e-18
ZcrcB [D] COG0239 Integral membrane protein possibly involved in...    87   1e-17
ECs0663 [D] COG0239 Integral membrane protein possibly involved ...    87   1e-17
crcB [D] COG0239 Integral membrane protein possibly involved in ...    86   2e-17

>RSc1333 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Rso Ralstonia solanacearum
          Length = 126

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 81/122 (66%)

Query: 1   MQWIAVGMGAALGAWLRWGLSLWLNVAGQALPLGTLAANWGGGFVIGFLVAFFEGHQGLP 60
           M ++AVG+GAALGAWLRW  ++  N    ALP GTLAAN  GG++IG  V FF+ H  LP
Sbjct: 4   MGFVAVGVGAALGAWLRWAFAVLWNAINPALPYGTLAANLLGGYLIGVAVGFFDTHASLP 63

Query: 61  VEWRLFLITGFLGGLTTFSTFSAEAMLLLQRGDYLLAIAHSGLHLLGSVALCVAGFAVYR 120
            EWRL  +TGFLGGLTTFSTFS+E M  +  GDY + + H   HL GS+ L + G    R
Sbjct: 64  PEWRLLAVTGFLGGLTTFSTFSSEVMANILAGDYAIGMLHVAAHLGGSLFLTMLGLWTVR 123

Query: 121 AV 122
            +
Sbjct: 124 TL 125


>PM1630 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Pmu Pasteurella multocida
          Length = 134

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 70/119 (58%)

Query: 2   QWIAVGMGAALGAWLRWGLSLWLNVAGQALPLGTLAANWGGGFVIGFLVAFFEGHQGLPV 61
           Q I +  GAALGA  RWGL L LN    A  LGTL AN+ G  +IG  +AFF  +     
Sbjct: 13  QIIFISSGAALGALSRWGLGLLLNPLFSAFSLGTLVANYLGCLIIGVFLAFFWQYPQCSA 72

Query: 62  EWRLFLITGFLGGLTTFSTFSAEAMLLLQRGDYLLAIAHSGLHLLGSVALCVAGFAVYR 120
           EWRLF +TGFLG LTTFSTFSAE +  L +  +L  +  +  HLLG +     G  ++R
Sbjct: 73  EWRLFFVTGFLGSLTTFSTFSAEVIENLIQQKWLAGLMLASGHLLGCLLFTALGVFIWR 131


>ZcrcB [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation EcZ Escherichia coli O157:H7
           EDL933
          Length = 127

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 73/118 (61%)

Query: 4   IAVGMGAALGAWLRWGLSLWLNVAGQALPLGTLAANWGGGFVIGFLVAFFEGHQGLPVEW 63
           +AV +G   G+  RW LS+  N   QA+PLGTLAAN  G F+IG   A+F     +   W
Sbjct: 6   LAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLIGAFIIGMGFAWFSRMTNIDPVW 65

Query: 64  RLFLITGFLGGLTTFSTFSAEAMLLLQRGDYLLAIAHSGLHLLGSVALCVAGFAVYRA 121
           ++ + TGF GGLTTFSTFSAE + LLQ G +  A+ +  ++LLGS A+    F ++ A
Sbjct: 66  KVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWLFSA 123


>ECs0663 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Ecs Escherichia coli O157:H7
          Length = 127

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 73/118 (61%)

Query: 4   IAVGMGAALGAWLRWGLSLWLNVAGQALPLGTLAANWGGGFVIGFLVAFFEGHQGLPVEW 63
           +AV +G   G+  RW LS+  N   QA+PLGTLAAN  G F+IG   A+F     +   W
Sbjct: 6   LAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLIGAFIIGMGFAWFSRMTNIDPVW 65

Query: 64  RLFLITGFLGGLTTFSTFSAEAMLLLQRGDYLLAIAHSGLHLLGSVALCVAGFAVYRA 121
           ++ + TGF GGLTTFSTFSAE + LLQ G +  A+ +  ++LLGS A+    F ++ A
Sbjct: 66  KVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWLFSA 123


>crcB [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Eco Escherichia coli K12
          Length = 127

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 72/118 (61%)

Query: 4   IAVGMGAALGAWLRWGLSLWLNVAGQALPLGTLAANWGGGFVIGFLVAFFEGHQGLPVEW 63
           +AV +G   G+  RW LS+  N   QA+PLGTL AN  G F+IG   A+F     +   W
Sbjct: 6   LAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIGAFIIGIGFAWFSRMTNIDPVW 65

Query: 64  RLFLITGFLGGLTTFSTFSAEAMLLLQRGDYLLAIAHSGLHLLGSVALCVAGFAVYRA 121
           ++ + TGF GGLTTFSTFSAE + LLQ G +  A+ +  ++LLGS A+    F ++ A
Sbjct: 66  KVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWLFSA 123