BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0206.p (313 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3895 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 384 e-106 PA0876 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 346 4e-95 PA0159 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 306 3e-83 PA2838 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 263 5e-70 RSc0065 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 208 1e-53 >PA3895 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 317 Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/309 (62%), Positives = 252/309 (81%), Gaps = 1/309 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQNMR F+ V + GSFT A+QQ+ TTA+VSRAVA+LE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AG+RYLLRCEQI++YV+EAEAEASDA+ RP+G+L++H+MT GQ YVI A++ Y+++Y D Sbjct: 61 AGQRYLLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRD 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V +LT+A R+PDLL+EGFDV++V+A ELPDSG I +++ YSILCASP YL +GTP Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPS 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAI-KSNFHVNVAEAMLLSLKEGMGIG 239 +P EL +H+CL+LVSPV PLD W +GP+G+E+V+I S F VNV +AM +++ G+GIG Sbjct: 181 EPSELASHDCLRLVSPVVPLDRWLFDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 +LP+YSA++ L GT+VRVLP++R+Q + VYALYPSRQYLDAKI TWV+++ ES+ LQ Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYLKESLPGLLQ 300 Query: 300 DDHQALDRL 308 D AL L Sbjct: 301 RDEAALVEL 309 >PA0876 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 314 Score = 346 bits (888), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 175/306 (57%), Positives = 233/306 (76%), Gaps = 1/306 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MD L NMR F+ V + GSFT AAQ+++LTTA+VSRAVA LE HL+TRLL+RTTRRIALTE Sbjct: 1 MDILFNMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AG+RYL+R +QI++Y++EAEAEA DA+ RPSG L++H MT GQ Y+I A+S Y + YP+ Sbjct: 61 AGQRYLMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPE 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V +LTLA RI D+L+EG+D+S+V+A ELPDSG + + + YSILCASP Y+ HG P+ Sbjct: 121 VGFDLTLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPK 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAI-KSNFHVNVAEAMLLSLKEGMGIG 239 P EL H CL+LV+ V LD W +GPDG+E+ I +++F VN A+AM ++ GMGIG Sbjct: 181 LPAELSAHRCLRLVNSVMSLDRWLFDGPDGQELACINQTHFQVNTADAMTEAVVSGMGIG 240 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 LP+Y+AV+ L+ G++VRVLPRY + + VYALYPSRQYLDAKI TWV+++ E + L Sbjct: 241 ALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFLREHMPAMLA 300 Query: 300 DDHQAL 305 D +L Sbjct: 301 ADEHSL 306 >PA0159 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 312 Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 157/301 (52%), Positives = 212/301 (70%), Gaps = 1/301 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQ MR+F RVVD+GSFT AAQ ++L+TA VSR ++DLE HL+TRLL+RTTRR+ALTE Sbjct: 1 MDTLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYL RC I+ ++ AEAEA+ A++RP GRLR+ ++ GQ +++P ++ Y +PD Sbjct: 61 AGERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPD 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V IELTL+QR PD+LEEG DV + R+LPDS + ++L SI+S+LCASP YL++HG P+ Sbjct: 121 VVIELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPR 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAIKSNFHVNVAEAMLLSLKEGMGIGV 240 +L H CL+L P P + W G V+ ++ F VNVAE M + K +GI + Sbjct: 181 SVDDLERHVCLRLQDPAYP-EGWIFADEQGERTVSPQNTFMVNVAEVMAQAAKADLGIAL 239 Query: 241 LPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQD 300 LP Y A ALR G ++RVLP + M +YALYPSR+YLDAKI TWVD + + + +A Sbjct: 240 LPSYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQELPQAFAR 299 Query: 301 D 301 D Sbjct: 300 D 300 >PA2838 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 323 Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 135/306 (44%), Positives = 193/306 (63%), Gaps = 1/306 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MD LQ +R F+RVV+ GSFT AAQ + + A VSR VA LE+ L RLL R TR + +TE Sbjct: 1 MDLLQGIRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 +G RY C+QI+ V A A+ D+ SGRLR+H +T G +++P + Y +PD Sbjct: 61 SGLRYYEHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPD 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V+++LTLAQ P LLEEG DV + L R LPDS L+ R L ++S++CA+P YL +HG P+ Sbjct: 121 VSVDLTLAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPR 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAIKSNFHVNVAEAMLLSLKEGMGIGV 240 P++LL H CL + +P P WA G G ++ + VN+ EA + G+G+ + Sbjct: 181 TPEDLLRHRCLNVAAPSCP-QGWAFVGERGETLLDLDEALKVNLPEAACAAAAAGLGVCL 239 Query: 241 LPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQD 300 LP + A AL+ G+++R+LP +R+ V+ LY SR+YLDAKI TWVD++ E + A + Sbjct: 240 LPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDFLRERLPLAFER 299 Query: 301 DHQALD 306 D LD Sbjct: 300 DRAILD 305 >RSc0065 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 312 Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 188/310 (60%), Gaps = 2/310 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MD LQ+MR+F +VV+ GSF AAQ + ++ A V+R VADLE HL TRLLNRTTR ++LT+ Sbjct: 1 MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 GE YL RC+QI+ + EAE+ A+ G LRI FG + ++ +Q+ YP+ Sbjct: 61 VGETYLQRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V ++ L+ R D++E+G DV ++++ S L+ R++ S ++ A+P YL +H TPQ Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREV-VAIKSNFHVNVAEAMLLSLKEGMGIG 239 + +++ +H + + P EW M PDG+ + V ++ + + AE M ++ MGI Sbjct: 181 RAEDIADHRVIAMWHP-QLRHEWEMTAPDGQSIAVPVQPSLVTSNAELMHRAVLADMGIA 239 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 +L Y A L +G +VRVLP+Y++ + +YPSR++L K+ T++D+M +A Q Sbjct: 240 ILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEAKQ 299 Query: 300 DDHQALDRLT 309 + +A LT Sbjct: 300 SEARAGRALT 309