BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0164.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1289 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos...   130   1e-30
RSc1127 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-pho...   126   1e-29
FN1224 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos...   105   3e-23
CT655 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosp...    93   1e-19
Cj0384c [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-pho...    92   2e-19

>XF1289 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate
           synthase Xfa Xylella fastidiosa 9a5c
          Length = 295

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 71/90 (78%)

Query: 1   VPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGIAGVFMETHPNPAEAKSDGPN 60
            PVVFDATHSVQLPG QG  SGGQREFVPVLARAA+AVGI+G+F ETHP+P  A SDGPN
Sbjct: 206 CPVVFDATHSVQLPGAQGGRSGGQREFVPVLARAAVAVGISGLFAETHPDPPNALSDGPN 265

Query: 61  AVPLARIKELLGTMIELDRIVKKSVFLEND 90
           A PL  +  LL T++ELD + KK  FLE D
Sbjct: 266 AWPLHTMAMLLETLVELDAVTKKRGFLEQD 295


>RSc1127 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate
           synthase Rso Ralstonia solanacearum
          Length = 284

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 80/90 (88%)

Query: 2   PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGIAGVFMETHPNPAEAKSDGPNA 61
           PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAA+A G+AGVFMETHP+PA AKSDGPNA
Sbjct: 194 PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGVFMETHPDPACAKSDGPNA 253

Query: 62  VPLARIKELLGTMIELDRIVKKSVFLENDF 91
           VPL R+K+LL  + ELD + K++ FLEN F
Sbjct: 254 VPLRRMKDLLSVLKELDTLTKRNGFLENQF 283


>FN1224 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate
           synthase Fnu Fusobacterium nucleatum
          Length = 286

 Score =  105 bits (262), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 2   PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGIAGVFMETHPNPAEAKSDGPNA 61
           PV+FD THSVQ PGG GT++ G RE+V  L RA +A+G+  +F E HPNPAEAKSDGPN 
Sbjct: 204 PVIFDVTHSVQKPGGLGTATSGDREYVYPLLRAGLAIGVDAIFAEVHPNPAEAKSDGPNM 263

Query: 62  VPLARIKELLGTMIELDRIVK 82
           + L  ++E+L   IE+D+IVK
Sbjct: 264 LYLKDLEEILKIAIEIDKIVK 284


>CT655 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate
           synthase Ctr Chlamydia trachomatis
          Length = 269

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 55/76 (72%)

Query: 2   PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGIAGVFMETHPNPAEAKSDGPNA 61
           PVVFD THSVQLPG   + SGGQ EF+PVL R+AIA G+ G+F+ETHPNP+ A SD  + 
Sbjct: 182 PVVFDGTHSVQLPGALHSQSGGQTEFIPVLTRSAIAAGVQGLFIETHPNPSSALSDAASM 241

Query: 62  VPLARIKELLGTMIEL 77
           + L  ++ LL   ++L
Sbjct: 242 LSLKDLERLLPAWVQL 257


>Cj0384c [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate
           synthase Cje Campylobacter jejuni
          Length = 271

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query: 2   PVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGIAGVFMETHPNPAEAKSDGPNA 61
           PV+FDATHSVQ+PG  G SSGG+ EFV  LARAA AVGI G F ETH NP EA  DGPN 
Sbjct: 188 PVIFDATHSVQMPGAAGGSSGGKSEFVEPLARAAAAVGIDGFFFETHINPCEALCDGPNM 247

Query: 62  VPLARIKELLGTMIELDRIVKKS 84
           + L R+K  + T++E+  I+K++
Sbjct: 248 LNLTRLKNCVNTLLEIQNIIKEN 270