BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0163.p (196 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1127 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-pho... 357 7e-99 XF1289 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos... 273 2e-73 FN1224 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos... 207 8e-54 BMEI0850 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-ph... 207 8e-54 CC1429 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phos... 207 1e-53 >RSc1127 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Rso Ralstonia solanacearum Length = 284 Score = 357 bits (917), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 170/195 (87%), Positives = 183/195 (93%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLC F+IGLD+PFFLIAGTCVIESEQM +DTAG LKEIT LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCDFEIGLDRPFFLIAGTCVIESEQMAIDTAGTLKEITGALGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 +SFRGLGME+GL ILA+V++Q+GVPVLTDIHEIDEIKPV+ VVDVLQTPAFLCRQTDFI Sbjct: 61 DASFRGLGMEEGLRILAEVRRQVGVPVLTDIHEIDEIKPVASVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVI KAR AA++AGLPED+FMACERG SFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARHAARDAGLPEDSFMACERGASFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPV 195 DMRSLAIMRETGAPV Sbjct: 181 DMRSLAIMRETGAPV 195 >XF1289 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Xfa Xylella fastidiosa 9a5c Length = 295 Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 133/195 (68%), Positives = 154/195 (78%), Gaps = 6/195 (3%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLCGF++GL+QP FLIAG CVIES Q+ LDTAG LKEIT++LG+ FI+KSSFDKANR+S Sbjct: 20 MKLCGFEVGLNQPLFLIAGPCVIESLQLQLDTAGVLKEITSKLGLNFIFKSSFDKANRTS 79 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 GSSFRG G+E+GL++L VK QIGVPVLTD+HE I V+ VVDVLQTPAFL RQTDFI Sbjct: 80 GSSFRGPGLEEGLKVLEAVKTQIGVPVLTDVHEYTPIDEVATVVDVLQTPAFLVRQTDFI 139 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 R GKPVNIKKGQFL+P DM V+ KA++ + CERG SFGYNNLVS Sbjct: 140 RNVCAVGKPVNIKKGQFLSPWDMKPVVEKAKSTGN------SQILVCERGASFGYNNLVS 193 Query: 181 DMRSLAIMRETGAPV 195 DMRSLA+MRETG PV Sbjct: 194 DMRSLAVMRETGCPV 208 >FN1224 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Fnu Fusobacterium nucleatum Length = 286 Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 100/187 (53%), Positives = 135/187 (72%), Gaps = 6/187 (3%) Query: 9 GLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSSGSSFRGLG 68 G + F LIAG CV+ES+++ + AG +KEI LGI +I+K+SFDKANRSS S+RG G Sbjct: 25 GGKKRFVLIAGPCVMESQELMDEVAGGIKEICDRLGIEYIFKASFDKANRSSIYSYRGPG 84 Query: 69 MEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFIRACAQSGK 128 +E+G+++L K+K++ VPV+TD+HE + K V++V D+LQ PAFLCRQTD + A A++GK Sbjct: 85 LEEGMKMLTKIKEKFNVPVITDVHEAWQCKEVAKVADILQIPAFLCRQTDLLIAAAETGK 144 Query: 129 PVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVSDMRSLAIM 188 VNIKKGQFLAP DM N++ K + + N M CERG +FGYNN+V DMRSL M Sbjct: 145 AVNIKKGQFLAPWDMKNIVVKMEESRNK------NIMLCERGSTFGYNNMVVDMRSLLEM 198 Query: 189 RETGAPV 195 R+ PV Sbjct: 199 RKFNYPV 205 >BMEI0850 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Bme Brucella melitensis Length = 277 Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 106/183 (57%), Positives = 132/183 (72%), Gaps = 6/183 (3%) Query: 13 PFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSSGSSFRGLGMEKG 72 P LIAG C +E+ + AG LKE+T +LGI +YKSSFDKANR+S + RG+G+EK Sbjct: 20 PLALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKA 79 Query: 73 LEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFIRACAQSGKPVNI 132 LE+ + +KK+ G PVLTDIH ++ V+ VVDVLQ PAFLCRQTD + A A++G+ VN+ Sbjct: 80 LEVFSDLKKEYGFPVLTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVNV 139 Query: 133 KKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVSDMRSLAIMRETG 192 KKGQFLAP DM NV+AK E+G P N +A ERGVSFGYN LVSDMR+L IM G Sbjct: 140 KKGQFLAPWDMKNVLAK----ITESGNP--NVLATERGVSFGYNTLVSDMRALPIMAGLG 193 Query: 193 APV 195 APV Sbjct: 194 APV 196 >CC1429 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Ccr Caulobacter vibrioides Length = 287 Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/188 (54%), Positives = 131/188 (69%), Gaps = 6/188 (3%) Query: 8 IGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSSGSSFRGL 67 IG + +IAG C +ES Q L+TA ALKE+ LG+ IYK+S+DKANR+S ++ RG+ Sbjct: 25 IGNGEKLSIIAGPCQMESRQHALETAHALKEMADRLGVGLIYKTSYDKANRTSANAQRGI 84 Query: 68 GMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFIRACAQSG 127 G++ L I ++++ G+P LTD+HE V+E VDV+Q PAFLCRQTD + A A +G Sbjct: 85 GLKDSLAIFQEIREVTGLPTLTDVHETSHCSIVAEAVDVIQIPAFLCRQTDLLVAAASTG 144 Query: 128 KPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVSDMRSLAI 187 + +NIKKGQFLAP DM NVIAK AG P N MACERG SFGYN LVSDMR+L I Sbjct: 145 RAINIKKGQFLAPWDMKNVIAKVTG----AGNP--NVMACERGASFGYNTLVSDMRALPI 198 Query: 188 MRETGAPV 195 M+E G PV Sbjct: 199 MKEIGCPV 206