BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0158.p (265 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1119 [L] COG0084 Mg-dependent DNase Rso Ralstonia solanacearum 257 1e-68 yjjVm [L] COG0084 Mg-dependent DNase Eco Escherichia coli K12 184 2e-46 PA3564 [L] COG0084 Mg-dependent DNase Pae Pseudomonas aeruginosa 175 7e-44 STM4564 [L] COG0084 Mg-dependent DNase Sty Salmonella typhimuriu... 171 2e-42 XF0177 [L] COG0084 Mg-dependent DNase Xfa Xylella fastidiosa 9a5c 164 2e-40 >RSc1119 [L] COG0084 Mg-dependent DNase Rso Ralstonia solanacearum Length = 271 Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 146/271 (53%), Positives = 181/271 (66%), Gaps = 12/271 (4%) Query: 1 MWVDTHCHLDAGEFAGEELAVAEGAAGQGVGMIVVPAVAPFNFDAVARLARQRGNCVYAL 60 MW+DTHCHLDA EF + AV E A GV IVVPA+A +NFD V LA ++ C YAL Sbjct: 1 MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYAL 60 Query: 61 GIHPLYVPNCDESDLSALRNAVEAALNDKRFVAIGEIGLDFFVPALKEPAMRDKQEHFYR 120 GIHPL + DL LR V A+++D RFVAIGEIGLDFF+P +P + ++Q Y+ Sbjct: 61 GIHPLCAAQASDDDLIELRRQVAASMDDPRFVAIGEIGLDFFIP---DPQV-ERQNAVYQ 116 Query: 121 EQLKLAREFDLPVLLHVRRSQDIILKYLRRIVVPGGIAHAFNGSFQQAETFIGLGFKLGF 180 QLK+AREFDLPVLLHVR+SQD + R V GIAHAFNGS QA +I GFKLGF Sbjct: 117 AQLKIAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGSDDQARHYIETGFKLGF 176 Query: 181 GGAMTFPRSLQIRRLAAEVPLEAVVLETDAPDISPAWLHPQ--------RNTPDQIPRIG 232 GG +TF R+ +IRRLAAE+PLE++VLETDAPD++PAWL RN P ++ I Sbjct: 177 GGVLTFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIA 236 Query: 233 QVLAELRGMDIADVAAATSANAHAVLPRLAA 263 LA LRG+ + +AA N+ +PRLAA Sbjct: 237 AALAALRGIAVDTLAAQARRNSVEAIPRLAA 267 >yjjVm [L] COG0084 Mg-dependent DNase Eco Escherichia coli K12 Length = 259 Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 7/258 (2%) Query: 2 WVDTHCHLDAGEFAGEELAVAEGAAGQGVGMIVVPAVAPFNFDAVARLARQRGNCVYALG 61 ++DTHCH D F+G+E A + AA GVG I+VPA NF V LA ALG Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALG 64 Query: 62 IHPLYVPNCDESDLSALRNAVEAALNDKRFVAIGEIGLDFFVPALKEPAMRDKQEHFYRE 121 +HP + + L L+ A+E + VA+GEIGLD F + ++Q+ E Sbjct: 65 LHPGMLEKHSDVSLEQLQQALER--RPAKVVAVGEIGLDLF----GDDPQFERQQWLLDE 118 Query: 122 QLKLAREFDLPVLLHVRRSQDIILKYLRRIVVP-GGIAHAFNGSFQQAETFIGLGFKLGF 180 QLKLA+ +DLPV+LH RR+ D + +L+R +P G+ H F+GS QQAE F+ LG+K+G Sbjct: 119 QLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGV 178 Query: 181 GGAMTFPRSLQIRRLAAEVPLEAVVLETDAPDISPAWLHPQRNTPDQIPRIGQVLAELRG 240 GG +T+PR+ + R + A++PL +++LETDAPD+ Q N P+Q R+ VL ELR Sbjct: 179 GGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRR 238 Query: 241 MDIADVAAATSANAHAVL 258 ++A A N + + Sbjct: 239 EPADEIAQALLNNTYTLF 256 >PA3564 [L] COG0084 Mg-dependent DNase Pae Pseudomonas aeruginosa Length = 225 Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 145/223 (65%), Gaps = 7/223 (3%) Query: 34 VVPAVAPFNFDAVARLARQRGNCVYALGIHPLYVPNCDESDLSALRNAVEAALNDKRFVA 93 +V V N+ V LA+ ALG+HP+Y+ L LR ++ + + A Sbjct: 1 MVLGVYRENWQRVWDLAQAEDGLYAALGLHPVYLARHRPQHLDDLRQWLQRLRGETKLCA 60 Query: 94 IGEIGLDFFVPALKEPAMRDKQEHFYREQLKLAREFDLPVLLHVRRSQDIILKYLRRIVV 153 +GEIGLD+++ L RD Q+ + QL+LA EF LP L+HVRR+ + L+RI + Sbjct: 61 VGEIGLDYYLEHLD----RDAQQALFEAQLRLAAEFRLPALIHVRRAHAATIATLKRIRL 116 Query: 154 PG-GIAHAFNGSFQQAETFIGLGFKLGFGGAMTFPRSLQIRRLAAEVPLEAVVLETDAPD 212 GI HAF GS ++A ++ LGF+LG GGA T+P++ ++R++AAE+P EA+VLETDAPD Sbjct: 117 ERRGIIHAFAGSREEAREYLKLGFRLGLGGAPTWPQANRLRKVAAELPAEAIVLETDAPD 176 Query: 213 ISPAWLHP-QRNTPDQIPRIGQVLAELRGMDIADVAAATSANA 254 ++P+ +HP QRN+P+ +P I + LAELRG+D ++AA++S NA Sbjct: 177 MAPS-MHPGQRNSPEHLPDICRALAELRGVDAEELAASSSRNA 218 >STM4564 [L] COG0084 Mg-dependent DNase Sty Salmonella typhimurium LT2 Length = 257 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/261 (39%), Positives = 150/261 (57%), Gaps = 9/261 (3%) Query: 2 WVDTHCHLDAGEFAGEELAVAEGAAGQGVGMIVVPAVAPFNFDAVARLARQRGNCVYALG 61 ++DTHCH D F G+E A + A GV I+VPA +F V LA + + ALG Sbjct: 5 FIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLYAALG 64 Query: 62 IHPLYVPNCDESDLSALRNAVEAALNDKRFVAIGEIGLDFFVPALKEPAMRDKQEHFYRE 121 +HP+ + + D L+ A+ N VA+GEIGLD + ++ +QE F Sbjct: 65 LHPIVIERHADDDSDKLQQALAQQQN---VVAVGEIGLDLY----RDDPQFARQERFLDA 117 Query: 122 QLKLAREFDLPVLLHVRRSQDIILKYLRRIVVP-GGIAHAFNGSFQQAETFIGLGFKLGF 180 QL+LA+ +DLPV+LH RR+ D + +L+R +P G+ H F GS QQAE F+ LG+K+G Sbjct: 118 QLQLAKRYDLPVILHSRRTHDKLAMHLKRQDLPRTGVVHGFAGSLQQAERFVRLGYKIGV 177 Query: 181 GGAMTFPRSLQIRRLAAEVPLEAVVLETDAPDISPAWLHPQRNTPDQIPRIGQVLAELRG 240 GG +T+PR+ + R + A +PL+A++LETDAPD+ Q N P+Q R+ L ELR Sbjct: 178 GGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRP 237 Query: 241 MDIADVAAATSANAHAVLPRL 261 + A+V A T L RL Sbjct: 238 -EPAEVIADTLYRNTITLFRL 257 >XF0177 [L] COG0084 Mg-dependent DNase Xfa Xylella fastidiosa 9a5c Length = 260 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 141/252 (55%), Gaps = 8/252 (3%) Query: 3 VDTHCHLDAGEFAGEELAVAEGAAGQGVGMIVVPAVAPFNFDAVARLARQRGNCVYALGI 62 +D+HCHLDA F G+ + A G+ V+PAV + + + Q A G+ Sbjct: 6 IDSHCHLDADAFDGDRAEIIARAQAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGL 65 Query: 63 HPLYVPNCDESDLSALRNAVEAALNDKRFVAIGEIGLDFFVPALKEPAMRDKQEHFYREQ 122 HP+++ + L ALR+ +E +R AIGE GLDF++ L R+ Q ++ Q Sbjct: 66 HPMFLTEHHPTHLHALRDWLE----HERPCAIGECGLDFYLEGLN----REMQHTYFIRQ 117 Query: 123 LKLAREFDLPVLLHVRRSQDIILKYLRRIVVPGGIAHAFNGSFQQAETFIGLGFKLGFGG 182 L LARE+ LPV++H R + + ++ ++ + G+ H+F+GS +QA LGF + GG Sbjct: 118 LMLAREYALPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSLEQARQLWKLGFMISLGG 177 Query: 183 AMTFPRSLQIRRLAAEVPLEAVVLETDAPDISPAWLHPQRNTPDQIPRIGQVLAELRGMD 242 AMT+PR+ ++ +LA E PL+ ++LETDAP + + +RN P ++ I +A LR D Sbjct: 178 AMTYPRAHRLHQLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQD 237 Query: 243 IADVAAATSANA 254 +++ T AN Sbjct: 238 RTEISKVTRANT 249