BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0148.p         (541 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0380_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  144   5e-34
slr1305_3 [T] COG2199 FOG Syn Synechocystis                           138   3e-32
all1219_3 [T] COG2199 FOG Nos Nostoc sp. PCC 7120                     138   3e-32
AGl2664_1 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C...   136   1e-31
RSc0588_4 [T] COG2199 FOG Rso Ralstonia solanacearum                  132   2e-30

>RSp0380_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 181

 Score =  144 bits (363), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 360 LKTHQSELQHQAHHDILTGLPNRVMLAERMQQAIAQTQRG---VALLFLDLDGFKPINDT 416
           ++  Q  ++H A HD LTGL NR  L +R++ A+A  +R    V+++FLDLD FK +NDT
Sbjct: 1   IREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDT 60

Query: 417 LGHKAGDQVLQEITQRLQKVARHSDTLARVGGDEFVLLATDLGAPLENGARALAEKCIRV 476
           LGH+ GDQ+L+E+  RLQ  AR +DT+AR+GGDEFV++   L      G R +AE+ +  
Sbjct: 61  LGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGT---GTRRVAERILAA 117

Query: 477 VADPLQIGHGEYKIGVSIGIAVC-ETYCDPDILLQAADKAMYDAKNKGRGCY 527
           +  P  I   E  +GVSIGIAV      DP+ LL+ AD AMY AK +GR  +
Sbjct: 118 IGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 169


>slr1305_3 [T] COG2199 FOG Syn Synechocystis
          Length = 188

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 112/183 (61%), Gaps = 7/183 (3%)

Query: 361 KTHQSELQHQAHHDILTGLPNRVMLAERMQQAIAQTQRG---VALLFLDLDGFKPINDTL 417
           K     L HQAH+D LTGLPNR++  +R+QQAI    R      L+FLDLD FK +NDTL
Sbjct: 3   KQQAEALFHQAHYDHLTGLPNRILAKDRLQQAIESALRQKHIFGLMFLDLDNFKKVNDTL 62

Query: 418 GHKAGDQVLQEITQRLQKVARHSDTLARVGGDEFVLLATDLGAPLENGARALAEKCIRVV 477
           GH AGDQ+L E+++RLQ+  R +DT+AR+GGDEF+++   +    +    A+A++ +RV+
Sbjct: 63  GHDAGDQLLVEVSERLQRALRQTDTVARLGGDEFLIILDQVSHSRK--LMAIAQRLLRVM 120

Query: 478 ADPLQIGHGEYKIGVSIGIAVC-ETYCDPDILLQAADKAMYDAKNKGRGCY-VIAPVTEA 535
             P+ +   E+ +  SIGI V  +     D+LL+ AD AMY AK  GR  +    P    
Sbjct: 121 RQPVNLQGLEFFVHGSIGITVFPDDGFHADVLLRNADTAMYAAKLAGRNMFRFFTPHMNQ 180

Query: 536 AVQ 538
           A Q
Sbjct: 181 AAQ 183


>all1219_3 [T] COG2199 FOG Nos Nostoc sp. PCC 7120
          Length = 199

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 6/177 (3%)

Query: 358 SRLKTHQSELQHQAHHDILTGLPNRVMLAERMQQAI---AQTQRGVALLFLDLDGFKPIN 414
           + LK  +  L++ A+HD LTGLPNR   AE++ ++I         + LLF+DLDGFK +N
Sbjct: 18  NELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNLSLGLLFIDLDGFKQVN 77

Query: 415 DTLGHKAGDQVLQEITQRLQKVARHSDTLARVGGDEFVLLATDLGAPLENGARALAEKCI 474
           D+LGH+ GD++L  I QRL    R SDT+AR+GGDEF ++   +  P    A  +AEK +
Sbjct: 78  DSLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAI--PNVQVAAKVAEKIL 135

Query: 475 RVVADPLQIGHGEYKIGVSIGIAVC-ETYCDPDILLQAADKAMYDAKNKGRGCYVIA 530
             + +P+ +     K+ VSIGI++  ET  DPD LL+ AD AMY AK+ G+  + +A
Sbjct: 136 ANITEPIVLNGCTAKVSVSIGISIYPETSLDPDTLLKKADAAMYRAKHLGKNRFELA 192


>AGl2664_1 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 382

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 103/170 (60%), Gaps = 8/170 (4%)

Query: 360 LKTHQSELQHQAHHDILTGLPNRVM----LAERMQQAIAQTQRGVALLFLDLDGFKPIND 415
           L+     L+H A+HD LTGLPNR +    L ER++++   T    A+L LDLDGFK +ND
Sbjct: 215 LQAKNVRLEHDAYHDALTGLPNRSLFRQELIERLRRSFGGTGT-TAILLLDLDGFKDVND 273

Query: 416 TLGHKAGDQVLQEITQRLQKVARHSDTLARVGGDEFVLLATDLGAPLENGARALAEKCIR 475
           TLGH AGD +LQ + QRL  +    D + R+GGDEF +++ DL    E+ AR L+ K I 
Sbjct: 274 TLGHDAGDALLQAVAQRLSAIGGDYDMVCRLGGDEFAVVSDDLN---EDAARRLSTKLID 330

Query: 476 VVADPLQIGHGEYKIGVSIGIAVCETYCDPDILLQAADKAMYDAKNKGRG 525
            ++   Q+G  E KIG  IGIA+     D D L + AD A+Y+AK  G G
Sbjct: 331 QISRTYQLGEQEVKIGTCIGIAISHGAVDADELFKRADLALYEAKAIGPG 380


>RSc0588_4 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 182

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 102/170 (60%), Gaps = 6/170 (3%)

Query: 364 QSELQHQAHHDILTGLPNRVMLAERMQQAIAQT---QRGVALLFLDLDGFKPINDTLGHK 420
           + +L+  A  D LTGL NR    +RMQ  + +     R  A+LFLDLDGFK +NDT GH+
Sbjct: 5   EQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGRQAAVLFLDLDGFKKVNDTAGHE 64

Query: 421 AGDQVLQEITQRLQKVARHSDTLARVGGDEFVLLATDLGAPLENGARALAEKCIRVVADP 480
           AGD +L+ + QRL    R +DTLAR+GGDEFV+L   + +  E  A  LA + I  +A P
Sbjct: 65  AGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQVRSLAE--AEQLARRIIAAIAQP 122

Query: 481 LQIGHGEYKIGVSIGIAVCETYC-DPDILLQAADKAMYDAKNKGRGCYVI 529
              G  EY +G SIGIAV   +  D   LL+ AD AMY+AK  GR  + +
Sbjct: 123 FSTGGTEYYLGASIGIAVHPDHGQDAATLLRCADAAMYNAKQNGRNQHRV 172