BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0138.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5504 [P] COG2011 ABC-type metal ion transport system, permease... 238 6e-63 XF0874 [P] COG2011 ABC-type metal ion transport system, permease... 223 3e-58 CC2668 [P] COG2011 ABC-type metal ion transport system, permease... 221 1e-57 BH3480 [P] COG2011 ABC-type metal ion transport system, permease... 191 1e-48 RSc0921 [P] COG2011 ABC-type metal ion transport system, permeas... 174 1e-43 >PA5504 [P] COG2011 ABC-type metal ion transport system, permease component Pae Pseudomonas aeruginosa Length = 225 Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 144/219 (65%), Positives = 187/219 (85%) Query: 2 IDFSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSL 61 + F+ IDW +I A+++T M G SL FTV++GLPLG+LLFLT +Q+ Q+ VY LSL Sbjct: 7 MSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSL 66 Query: 62 VVNVLRSVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRG 121 VVN+LRS+PF+ILLIVMIP+T+L+ GTSLGV G+IPPLV+G PFFARLVE LR++D+G Sbjct: 67 VVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKG 126 Query: 122 VLEACQAMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 181 ++EA QAMGAST QII+ ALLPEA PG++AA+T+TAITL+SY AM+GV+G GGLGDLAIR Sbjct: 127 IIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIR 186 Query: 182 FGYQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLYFTRK 220 FGYQRFQT+VM+VTV +L++LVQ+LQ GD+LV++F+RK Sbjct: 187 FGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK 225 >XF0874 [P] COG2011 ABC-type metal ion transport system, permease component Xfa Xylella fastidiosa 9a5c Length = 235 Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/219 (57%), Positives = 165/219 (75%) Query: 2 IDFSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSL 61 ++ V W DIG+ATL+TL M G +L + +GLPLGI L+L QL + VY L+L Sbjct: 17 VNLDVDKWKDIGRATLDTLFMVGGALPPALALGLPLGIALYLCNTSQLRSHPLVYTLLAL 76 Query: 62 VVNVLRSVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRG 121 VN+LRSVPF+IL+I MIPVTLL++GTSLG+ G+I PLVIG APF+ARLVE+ LR++DRG Sbjct: 77 AVNLLRSVPFIILMITMIPVTLLIMGTSLGIRGAILPLVIGAAPFYARLVESALREVDRG 136 Query: 122 VLEACQAMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 181 V+EA QAMGA+T Q+I+ LLPEA PGL+A TIT I ++ + AM G IG GGLGD+A R Sbjct: 137 VVEAAQAMGATTWQLIWRVLLPEARPGLIAGATITGIAVVGFTAMGGAIGSGGLGDVAYR 196 Query: 182 FGYQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLYFTRK 220 GY R T+V +VTV L+++VQL+Q FGD LV +++R+ Sbjct: 197 EGYLRSHTDVALVTVIALLMVVQLIQMFGDWLVAHYSRR 235 >CC2668 [P] COG2011 ABC-type metal ion transport system, permease component Ccr Caulobacter vibrioides Length = 224 Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/217 (65%), Positives = 178/217 (82%) Query: 4 FSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSLVV 63 F+ +DW +IGQATL+TLAM G S+ TV GLPLG++LFLT + Q+L R ALSL+V Sbjct: 8 FANVDWREIGQATLDTLAMLGGSMVLTVAGGLPLGVILFLTGKGQMLENRLANGALSLLV 67 Query: 64 NVLRSVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRGVL 123 N+LRSVPF+ILLIVMIP+T+ LVGTSLGV G+IPPLV G APFFARLVE LR++D+GV+ Sbjct: 68 NILRSVPFVILLIVMIPLTVALVGTSLGVAGAIPPLVAGAAPFFARLVETALREVDKGVI 127 Query: 124 EACQAMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRFG 183 EA AMGA Q++ GALLPEALPGL+AA T+TA+ L+SY AM+GV+G GGLGDLAIRFG Sbjct: 128 EASFAMGAKRRQVVLGALLPEALPGLVAAATVTAVALVSYTAMAGVVGAGGLGDLAIRFG 187 Query: 184 YQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLYFTRK 220 YQRFQT+VM+VTV +++VLVQ+LQ GD +V +R+ Sbjct: 188 YQRFQTDVMVVTVVLMLVLVQVLQMIGDAVVRKVSRR 224 >BH3480 [P] COG2011 ABC-type metal ion transport system, permease component Bha Bacillus halodurans Length = 218 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 140/204 (68%) Query: 8 DWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSLVVNVLR 67 W + +AT ET+ MT +S+ T +IG+ LG++LFLT++ + ++ S +VN+ R Sbjct: 6 KWDALWEATKETIYMTSVSVVATFVIGIILGLILFLTSKGNMWQNVAIHTVFSAIVNIFR 65 Query: 68 SVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRGVLEACQ 127 S+PF+IL++++IP T L G+ LG ++P L+IG APF+AR+VE LR+ID+GV+EA Q Sbjct: 66 SIPFIILIVLLIPFTRALFGSMLGANAALPALIIGAAPFYARMVEIALREIDKGVIEAAQ 125 Query: 128 AMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRFGYQRF 187 AMGA +II L+PE+ P L++ +T+TAI L+SY AM+GVIG GGLG A G+QR Sbjct: 126 AMGAGHFRIICRVLIPESFPALISGITVTAIALVSYTAMAGVIGAGGLGHFAFLEGFQRN 185 Query: 188 QTEVMIVTVAVLVVLVQLLQFFGD 211 E+ +V ++ LV ++Q+ GD Sbjct: 186 NPEITLVATITILFLVFIIQWIGD 209 >RSc0921 [P] COG2011 ABC-type metal ion transport system, permease component Rso Ralstonia solanacearum Length = 217 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/216 (48%), Positives = 149/216 (68%), Gaps = 4/216 (1%) Query: 9 WGDIGQATL----ETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSLVVN 64 W D+ L ETLAM G+S L G+PLG+LL+LT +L+ L+VN Sbjct: 2 WSDLTDLFLPAFGETLAMVGVSGGIGALFGVPLGVLLYLTGPGGVLSAPAFNRIAGLIVN 61 Query: 65 VLRSVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRGVLE 124 +RSVPF+ILL+ +IP T LL G+S+G + PL + PF ARLVE LR++DRG++E Sbjct: 62 AVRSVPFIILLVAVIPFTRLLAGSSIGTAAATVPLTLAAIPFIARLVETALREVDRGLIE 121 Query: 125 ACQAMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRFGY 184 A Q+MGA+T Q+++ LLPEA+PG+LA +TIT ++L+ Y+AM+G IGGGGLGDL IR+GY Sbjct: 122 AAQSMGATTGQLVYKVLLPEAMPGILAGLTITFVSLVGYSAMAGTIGGGGLGDLGIRYGY 181 Query: 185 QRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLYFTRK 220 QR+++++M+ V +L+V VQ +Q GD LV + + Sbjct: 182 QRYESDIMLAVVVILIVFVQAVQSTGDWLVRRLSHR 217