BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0128.p (360 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1044 [OU] COG0616 Periplasmic serine proteases (ClpP class) R... 318 1e-86 PA2973 [OU] COG0616 Periplasmic serine proteases (ClpP class) Pa... 235 1e-61 NMB2127 [OU] COG0616 Periplasmic serine proteases (ClpP class) N... 189 6e-48 NMA0305 [OU] COG0616 Periplasmic serine proteases (ClpP class) N... 189 8e-48 AGc1130 [OU] COG0616 Periplasmic serine proteases (ClpP class) A... 147 3e-35 >RSc1044 [OU] COG0616 Periplasmic serine proteases (ClpP class) Rso Ralstonia solanacearum Length = 378 Score = 318 bits (814), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 157/250 (62%), Positives = 191/250 (76%), Gaps = 1/250 (0%) Query: 25 GTATAVAAEEKKGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYT 84 G + A A GWERDVLE++ L A++EQRA RRW IFF+ L + +++ F Sbjct: 55 GESGAPRASGAPAGWERDVLERVLLAAIREQRAARRWRIFFRFVTLGIIGGLLY-LFASF 113 Query: 85 KSESEPVGTHTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQ 144 + E+ G HTALV + G I A SA + +L+ AFA D++ GVILKINSPGGSPVQ Sbjct: 114 EGETVSSGRHTALVTLDGEIAANTNASADNINASLEAAFADDNTAGVILKINSPGGSPVQ 173 Query: 145 AGMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGF 204 AGMIND+I RLR +Y PLYVVVEEMCASGGYY+AAAADKIYV+KASIVGSIGVLMDGF Sbjct: 174 AGMINDDIRRLRAKYKNIPLYVVVEEMCASGGYYVAAAADKIYVDKASIVGSIGVLMDGF 233 Query: 205 GFTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQ 264 GFTGLMDK+GVERRLLTAG NKG LDPFS P+Q+++AQ ML+E+HQQFIDVV++GRG Sbjct: 234 GFTGLMDKLGVERRLLTAGTNKGMLDPFSPVAPQQRQFAQAMLDEVHQQFIDVVKQGRGS 293 Query: 265 RLKETPETFA 274 RLK+ P+ F+ Sbjct: 294 RLKDDPQLFS 303 >PA2973 [OU] COG0616 Periplasmic serine proteases (ClpP class) Pae Pseudomonas aeruginosa Length = 326 Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 163/237 (68%), Gaps = 6/237 (2%) Query: 43 VLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVI---WSAFNYTKSESEPVGTHTALVE 99 +LEK L V+EQR RRW IFFK +++FV+ +S F + + G+HTAL+E Sbjct: 20 LLEKAVLAGVQEQRRARRWGIFFKSLTF-IYLFVVLLAFSPFGSLEKSASRSGSHTALIE 78 Query: 100 ISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVRLRKEY 159 + G I + SA ++ AL AF + + G++L+INSPGGSPVQ+G I DEI RLR E+ Sbjct: 79 VKGMIADDEPASADNIVTALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRLRGEH 138 Query: 160 PKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRL 219 P +Y V+ ++ ASG YYIA+AAD+IY +KAS+VGSIGV FGF G M+K+GVERR+ Sbjct: 139 PNVKVYAVISDLGASGAYYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGVERRV 198 Query: 220 LTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKET--PETFA 274 T+GE+K FLDPF Q P++ ++ QQ+L+ H+QFID V+KGRG RLK PE F+ Sbjct: 199 YTSGEHKSFLDPFQPQKPEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGHPELFS 255 >NMB2127 [OU] COG0616 Periplasmic serine proteases (ClpP class) Nme Neisseria meningitidis MC58 Length = 328 Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/254 (40%), Positives = 152/254 (59%), Gaps = 7/254 (2%) Query: 31 AAEEKKGG---WERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSE 87 A E K G WERD++ ++ L A +++R R W ++ + V +I F ++ Sbjct: 11 APEAKNAGETLWERDIMREVLLSAYQDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAA 70 Query: 88 SEPVGT--HTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQA 145 + G HTA+V + G I + ++ A+ + ++++ NSPGGSPV + Sbjct: 71 LQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVS 130 Query: 146 GMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFG 205 +EI RL+ ++P P+Y+V E+MCASG YYIAAAADKIY + +SIVGSIGV+ F Sbjct: 131 NTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFD 190 Query: 206 FTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQR 265 TGLM+K+GV+RR+ AG NKG DPFS + P+Q + ++ML IH +FI V+ GRG R Sbjct: 191 ATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGR 250 Query: 266 LK--ETPETFATRC 277 LK + P+ F+ R Sbjct: 251 LKFRQYPDVFSGRV 264 >NMA0305 [OU] COG0616 Periplasmic serine proteases (ClpP class) NmA Neisseria meningitidis Z2491 Length = 328 Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 102/254 (40%), Positives = 152/254 (59%), Gaps = 7/254 (2%) Query: 31 AAEEKKGG---WERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSE 87 A E K G WERD++ ++ L A +++R R W ++ + V +I F ++ Sbjct: 11 APEAKNAGETLWERDMMREVLLSAYRDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAA 70 Query: 88 SEPVGT--HTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQA 145 + G HTA+V + G I + ++ A+ + ++++ NSPGGSPV + Sbjct: 71 LQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVS 130 Query: 146 GMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFG 205 +EI RL+ ++P P+Y+V E+MCASG YYIAAAADKIY + +SIVGSIGV+ F Sbjct: 131 NTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFD 190 Query: 206 FTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQR 265 TGLM+K+GV+RR+ AG NKG DPFS + P+Q + ++ML IH +FI V+ GRG R Sbjct: 191 ATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGR 250 Query: 266 LK--ETPETFATRC 277 LK + P+ F+ R Sbjct: 251 LKFRQYPDVFSGRV 264 >AGc1130 [OU] COG0616 Periplasmic serine proteases (ClpP class) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 289 Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 135/248 (54%), Gaps = 20/248 (8%) Query: 97 LVEISGTIEAEGRG-----SAAAVIPALDKAFAADDSLGVILKINSPGGSPVQAGMINDE 151 +V + G I A G + A+ P L+KAFA D+ V + +NSPGGSPVQA MI + Sbjct: 22 VVRMQGAIMAGGNQFRPALNLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNR 81 Query: 152 IVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMD 211 I +L +E KK L + VE++ ASGGY IA A D+I + SIVGSIGV+ GFGF ++ Sbjct: 82 IRQLAEEKDKKVL-IFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPEMLR 140 Query: 212 KVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPE 271 K+GVERR+ TAGENK LDPF + +Y + + EIH FID+V+ RG +LK Sbjct: 141 KIGVERRVYTAGENKVILDPFQPEKEGDIDYLKSLQVEIHNVFIDMVKMRRGSKLKGDDA 200 Query: 272 TFA------TRCADETFSKPHPAMLQELTRELGQEM-------GRTLMIGDTTHDLQMAL 318 F+ R D M + L R G ++ GR+L G + MAL Sbjct: 201 LFSGLFWTGMRGLDLGLIDGLGDMREVLRRRYGTKVKLQLISGGRSLF-GKKVPGVNMAL 259 Query: 319 NAGAAGVA 326 A +A Sbjct: 260 GLNAERLA 267