BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0127.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...   155   3e-38
PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    77   9e-15
CC2530 Non COG                                                         69   2e-12

>RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Rso Ralstonia
           solanacearum
          Length = 138

 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 87/114 (76%)

Query: 6   IQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWAEGEFF 65
           +++CA A++ +GG G RF V V G     FVVRY G V+GYLN+CAHVP+E+DW EG+FF
Sbjct: 11  VRICAGADLLDGGLGVRFPVEVRGRPMGAFVVRYAGGVHGYLNQCAHVPMEMDWQEGQFF 70

Query: 66  ESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDGAIFWAPDDYVR 119
           ESSGLYLMCATHGA+Y PDTG+C GGPC GA L K+ V E+DG ++W PD   R
Sbjct: 71  ESSGLYLMCATHGAIYEPDTGRCVGGPCRGAHLTKLDVAERDGDVWWRPDALCR 124


>PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Pae Pseudomonas
           aeruginosa
          Length = 115

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 6   IQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWAEGEFF 65
           I +C S+ + EG   R F V    D+   F VR  G  Y YLNRC H  I L+W    F 
Sbjct: 10  IHLCPSSHLAEG-NSRGFLV----DERRLFAVRRDGRAYIYLNRCPHRGIPLEWQPDTFL 64

Query: 66  ESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDGAIFWAPDD 116
           + S   + CA+HGA++  ++G+C  GPC G RLR +   E    ++   DD
Sbjct: 65  DDSASLIRCASHGALFLIESGECVAGPCAGERLRALPCREDAEGLWVELDD 115


>CC2530 Non COG
          Length = 90

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%)

Query: 34  GFVVRYGGAVYGYLNRCAHVPIELDWAEGEFFESSGLYLMCATHGAVYAPDTGKCEGGPC 93
           GFVVR G AV+GY++RC H  + L      +    G  ++C+ HGAV+  + G C GGPC
Sbjct: 11  GFVVRRGEAVFGYVDRCPHAGLPLAQELDRYLTPDGDLILCSWHGAVFKVEDGACVGGPC 70

Query: 94  TGARLRKIMVFEKDGAIFWA 113
           TGARL+   V  ++G +  A
Sbjct: 71  TGARLKPWPVEAREGRVVTA 90