BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0109.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4874 Non COG                                                         86   2e-17
psiF Non COG                                                           79   3e-15
ZpsiF Non COG                                                          79   3e-15
ECs0434 Non COG                                                        79   3e-15
STM0384 Non COG                                                        75   5e-14

>PA4874 Non COG
          Length = 138

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 54/76 (71%), Gaps = 6/76 (7%)

Query: 26  TAQQSKMTTCNKDATGK--KGDERKAFMKDCLSNKPAAPAAPATQQDKMKSCNKDATGK- 82
           TAQQ KM +CN DA+ K  KGDERKAFM  CL  K    A  ATQQ+KMK+CN DAT K 
Sbjct: 65  TAQQEKMKSCNADASAKSLKGDERKAFMSSCL--KAGGSAKAATQQEKMKTCNADATAKA 122

Query: 83  -KGDDRKAFMKECLKK 97
            KGD+RKAFM  CLKK
Sbjct: 123 LKGDERKAFMSTCLKK 138



 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 57/89 (64%), Gaps = 8/89 (8%)

Query: 14 VMLAPVAMAQTQTAQQSKMTTCNKDATGK--KGDERKAFMKDCLSNKPAAPAA--PATQQ 69
          + +A  A     TAQQ KMT CN +AT K  KGDERKAFM  CL  K  APA      QQ
Sbjct: 11 LAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCL--KAGAPAGGKATAQQ 68

Query: 70 DKMKSCNKDATGK--KGDDRKAFMKECLK 96
          +KMKSCN DA+ K  KGD+RKAFM  CLK
Sbjct: 69 EKMKSCNADASAKSLKGDERKAFMSSCLK 97


>psiF Non COG
          Length = 112

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 1   MKKLIAALALVAPVMLAPVAMAQ-TQTAQQSKMTTCNKDATGK--KGDERKAFMKDCLSN 57
           MK  +    L   V L  V  A+ T T QQ +MT+CN+ AT +  KGD RK +M DCL N
Sbjct: 7   MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN 66

Query: 58  KPAAPAAPAT--QQDKMKSCNKDATGK--KGDDRKAFMKECLKK 97
             +AP   +   QQ KM+ CN  AT +  KGDDR  FM  CLKK
Sbjct: 67  SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKK 110


>ZpsiF Non COG
          Length = 112

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 1   MKKLIAALALVAPVMLAPVAMAQ-TQTAQQSKMTTCNKDATGK--KGDERKAFMKDCLSN 57
           MK  +    L   V L  V  A+ T T QQ +MT+CN+ AT +  KGD RK +M DCL N
Sbjct: 7   MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN 66

Query: 58  KPAAPAAPAT--QQDKMKSCNKDATGK--KGDDRKAFMKECLKK 97
             +AP   +   QQ KM+ CN  AT +  KGDDR  FM  CLKK
Sbjct: 67  SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKK 110


>ECs0434 Non COG
          Length = 112

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 1   MKKLIAALALVAPVMLAPVAMAQ-TQTAQQSKMTTCNKDATGK--KGDERKAFMKDCLSN 57
           MK  +    L   V L  V  A+ T T QQ +MT+CN+ AT +  KGD RK +M DCL N
Sbjct: 7   MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKN 66

Query: 58  KPAAPAAPAT--QQDKMKSCNKDATGK--KGDDRKAFMKECLKK 97
             +AP   +   QQ KM+ CN  AT +  KGDDR  FM  CLKK
Sbjct: 67  SKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKK 110


>STM0384 Non COG
          Length = 106

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 1   MKKLIAALALVAPVMLAPV-AMAQTQTAQQSKMTTCNKDATGK--KGDERKAFMKDCLSN 57
           MK  +    L   V L  V A  +  T QQ +MTTCN+ AT +  KGD RK ++ DCL N
Sbjct: 1   MKITLLVTLLFGLVFLTAVGATEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKN 60

Query: 58  KPAAPAAPAT--QQDKMKSCNKDATGK--KGDDRKAFMKECLKK 97
             +AP   +   QQ KM+ CN  AT +  KGDDR  FM  CLKK
Sbjct: 61  SQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKK 104