BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0096.p         (92 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1229 [J] COG0566 rRNA methylases Rso Ralstonia solanacearum        151   3e-37
PA4936 [J] COG0566 rRNA methylases Pae Pseudomonas aeruginosa         129   1e-30
YPO0381 [J] COG0566 rRNA methylases Ype Yersinia pestis               129   2e-30
VC2598 [J] COG0566 rRNA methylases Vch Vibrio cholerae                128   4e-30
yjfH [J] COG0566 rRNA methylases Eco Escherichia coli K12             126   1e-29

>RSc1229 [J] COG0566 rRNA methylases Rso Ralstonia solanacearum
          Length = 249

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 80/89 (89%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+R+L+ RGVW+IG AD+A++DLY  DF GP ALVMG+EGEGMRRLTRETCD L
Sbjct: 155 VTNLARTLRELQQRGVWVIGTADEAEQDLYRADFKGPIALVMGAEGEGMRRLTRETCDTL 214

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQR 89
           VSIPM GSVESLNVSVASGVCL+EA RQR
Sbjct: 215 VSIPMAGSVESLNVSVASGVCLFEAVRQR 243


>PA4936 [J] COG0566 rRNA methylases Pae Pseudomonas aeruginosa
          Length = 248

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 71/91 (78%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+  L+ RG+W++G A +ADK LY  D  GPT LVMG+EG+GMRRLTRE CD L
Sbjct: 156 VTNLARTLEKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGMRRLTREHCDFL 215

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQRLP 91
             +PM GSV SLNVSVA+GVCL+E  RQR P
Sbjct: 216 ARLPMAGSVSSLNVSVATGVCLFEILRQRTP 246


>YPO0381 [J] COG0566 rRNA methylases Ype Yersinia pestis
          Length = 246

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 71/89 (79%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+R L++  VW++G A +AD  LY    +GP ALVMG+EGEGMRRLTRE CD L
Sbjct: 154 VTNLARTLRVLQEHNVWIVGTAGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDEL 213

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQR 89
           +SIPM GSV SLNVSVA+GVCL+E  RQR
Sbjct: 214 ISIPMAGSVSSLNVSVATGVCLFEVVRQR 242


>VC2598 [J] COG0566 rRNA methylases Vch Vibrio cholerae
          Length = 247

 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 72/90 (80%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLARTMR L+++GVW +G A +A  D+Y    +G  A+VMG+EG+GMRRLTRETCD L
Sbjct: 155 VTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDL 214

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQRL 90
           + IPM GSV SLNVSVA GVCL+EA RQR+
Sbjct: 215 IKIPMAGSVSSLNVSVACGVCLFEAVRQRM 244


>yjfH [J] COG0566 rRNA methylases Eco Escherichia coli K12
          Length = 243

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 71/89 (79%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLARTMR L++  +W++G A +AD  LY    +G  ALVMG+EGEGMRRLTRE CD L
Sbjct: 154 VTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDEL 213

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQR 89
           +SIPM GSV SLNVSVA+G+CL+EA RQR
Sbjct: 214 ISIPMAGSVSSLNVSVATGICLFEAVRQR 242