BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0085.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 383 e-106 RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 336 5e-92 YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 301 1e-81 STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 277 2e-74 yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 272 5e-73 >PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust. Identities = 178/293 (60%), Positives = 232/293 (79%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M SDE++ F++VV++GS+SAAAE + T S VSR L+RLE KLGT+LL RTTRRM+LT Sbjct: 1 MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ FL+QAR+I+ ME EE + +R Q P G+LR++A++PFMLH +VPH+G FR YP Sbjct: 61 EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 DI+L+L TND IDL+EQRTD+AIRIG L DSTLHA+PL ++RL +LASPEYL RHGTP Sbjct: 121 DIQLELNTNDLIIDLLEQRTDVAIRIGALSDSTLHARPLGASRLHILASPEYLARHGTPA 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 +++ L H L+GFTQPE LN WP+ H DGDR I+P + ASSGET+RQLAL QGIACL+ Sbjct: 181 SIEGLRGHTLLGFTQPEHLNRWPVVHADGDRLEIQPDISASSGETLRQLALSHQGIACLA 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFLQCKL 293 +FM D D+++GRLV L + + +RQ IHAVYYRN++++ RI CFLDF+Q +L Sbjct: 241 SFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293 >RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 297 Score = 336 bits (861), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 168/293 (57%), Positives = 216/293 (73%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M +E+ F VV+ GS++AAAE L QT SGVSRAL RLEEKL T+LL+RTTRR+ LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 +EG FL AR I+AA++ AEE I +R Q+P G+LRV+A+ PFMLH I P V FR YP Sbjct: 61 DEGTAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 IEL+L T+DR IDL+E+ TD+AIRIG L+DSTL A+ L + RL++LASP YL+ HG P+ Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIGALRDSTLRARRLGTRRLRVLASPAYLKAHGRPR 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 TV L H L+GF QPE LN+WPL+ GDR I P L+ASSGET+RQLAL G GI CL+ Sbjct: 181 TVDALRHHALLGFVQPESLNHWPLRGPHGDRLRITPTLKASSGETLRQLALQGAGIVCLA 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFLQCKL 293 +FM D + G LV++L ++ +Q IHAVYYRNT+++ RI+CFLD L+ +L Sbjct: 241 DFMTARDRRAGDLVQVLPEATVEIQQPIHAVYYRNTQLASRITCFLDVLEARL 293 >YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 303 Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/295 (56%), Positives = 217/295 (73%), Gaps = 2/295 (0%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M + +E++ F +VV+ GS++AAAE QTTSG+SRAL+RLE+KL T+LL RTTRR++LT Sbjct: 1 MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG +FL AR+I+ A++ AEE I +R KP G+LRV+A+APFM H IVP + FR YP Sbjct: 61 EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 I L+L T+D IDL+EQRTDIAIRIG L+DST+HA+ L ++R++LLASP YL+RHGTP Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRIGALRDSTIHARLLGASRVRLLASPNYLQRHGTPH 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 ++ L H L+GFTQPE LN W L H G R I P L ASSGET+R LAL G+GIA LS Sbjct: 181 IIEALADHSLLGFTQPEFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGEGIAELS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFL--QCKL 293 +FM D GRLV +L Q I+AVYYRNT+++ RI+CFLD++ Q KL Sbjct: 241 DFMTREDQLAGRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIKL 295 >STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/289 (45%), Positives = 193/289 (66%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M S+E+ IF+AVVE+GS S AAE L Q S VSRA+ +LE KLG SLL RTTR++ LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ + + ++I+ M AE I P G LR+DA+ P MLH ++P + FRE YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +I L L +++ FI+L+E++ D+AIR G L DS+L A+PL ++ +++ASP+Y+ R G P+ Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLFTSYRKIIASPDYIARFGKPE 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 TV++L +H +GF++P LN WP+ DG + I+ + ++SGET++QL L+G GIACLS Sbjct: 181 TVEELKRHLCLGFSEPVSLNTWPIACSDGQLHEIKCGISSNSGETLKQLCLNGNGIACLS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFL 289 ++M+D ++ G LV LL AVYY + +S RI F+DFL Sbjct: 241 DYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289 >yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 304 Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 128/289 (44%), Positives = 190/289 (65%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M S+E+ IF++VVE+GS S AAE L Q S VSRA+ +LE KLG SLL RTTR++ LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ + + + I+ M AE I P G LR+DA+ P +LH ++P + FRE YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 ++ L L +++ I+L+E++ D+AIR G L DS+L A+PL ++ +++ASP+Y+ R+G P+ Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPE 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 T+ DL +H +GFT+P LN WP+ DG + ++ L ++SGET++QL L G GIACLS Sbjct: 181 TIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFL 289 ++M+D ++ G LV L+ AVYY + +S RI F+DFL Sbjct: 241 DYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289