BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0084.p (416 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr4084 Non COG 360 4e-99 mlr2770 Non COG 301 1e-81 AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ... 291 2e-78 STM0257 [G] COG2814 Arabinose efflux permease Sty Salmonella typ... 290 3e-78 PA4355 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aer... 280 4e-75 >mlr4084 Non COG Length = 397 Score = 360 bits (924), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 190/341 (55%), Positives = 248/341 (72%), Gaps = 9/341 (2%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MPIAL+ALA AF IG TEFVIMGLL +V+ +LG ++S+AG L++GYALGV +GAPL+T Sbjct: 1 MPIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTI 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG PRKT+L++LM +F +GN+ CA+APDY LM +RI+ +F+HG FFGVGSVVATGLV Sbjct: 61 ATGNWPRKTVLLALMAIFTLGNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 K+ASAIALMFTGLT+AN+LGVPFGTWLGQ +GWR+TFWAV+A+G+ A LVPR Sbjct: 121 APNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFWAVTAVGLAAFAVILALVPR 180 Query: 181 SD-DRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 S + +D R++L VL R VLLGL TVLG+ GVFA FTYIAP+LT+I+GF+ AVSP Sbjct: 181 SQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSP 240 Query: 240 ILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLFSFTSHYKLAASRKAPTCG 299 ILL+FG GL+ GNL GGK AD++L+P ++ SLV+LA VL SF H ++ A Sbjct: 241 ILLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLA-------- 292 Query: 300 TIQCSMNGAEASTRSLPTGFWLRMRIDSSARSMAATISRAC 340 I + GA A P W+ + + +S+A++ + A Sbjct: 293 VIYVGLLGAAAFATVAPLQMWVLDKAQGAGQSLASSFNIAA 333 >mlr2770 Non COG Length = 391 Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/283 (57%), Positives = 210/283 (74%), Gaps = 3/283 (1%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+ + ALAI++F IGTTEFVIMGLLPEVAA+L ++ SAGLLVTGYALGV GAP+V Sbjct: 1 MPLPILALAIASFCIGTTEFVIMGLLPEVAADLRVSIPSAGLLVTGYALGVVFGAPIVAM 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 T LPRK +LV L FV+GN+ CAIAPDY TLM +R+ +F HGAFFG+GSVVA LV Sbjct: 61 ATAHLPRKPVLVGLAASFVVGNLFCAIAPDYWTLMAARVFTAFGHGAFFGIGSVVAASLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 P+ K+ASA+ALMF GLT++N+LGVP GT LG+ +GWRSTF AV IG++++ A A+LVP Sbjct: 121 PRNKRASAMALMFAGLTLSNILGVPAGTALGEAFGWRSTFIAVVGIGLISVAAIAWLVP- 179 Query: 181 SD--DRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVS 238 SD + R ELRVLGR QV L +L+ L +FA FTYI P LTD++G AV+ Sbjct: 180 SDVAEPSGGGLRGELRVLGRLQVWLAMLIASLASASLFAVFTYIKPYLTDVSGLSTSAVT 239 Query: 239 PILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLF 281 +LLLFG G+ GN++GG+ AD LMPT++ +L+L+A + + F Sbjct: 240 WVLLLFGAGMTIGNIIGGRLADWKLMPTVIGTLLLMAVLFIGF 282 >AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 291 bits (745), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/286 (52%), Positives = 212/286 (74%), Gaps = 1/286 (0%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+A++AL I+A+AIGTTEFVI+GLLP VA +L TL AGL+V+ YALGV GAP++TA Sbjct: 39 MPLAIFALTIAAYAIGTTEFVIVGLLPTVANDLHITLPLAGLIVSVYALGVTFGAPILTA 98 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG++ RK LL+ LM LF++GN A++P Y L+++R++A+F+HG FF VG+ +A LV Sbjct: 99 LTGRIERKPLLLGLMALFIVGNTAAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLV 158 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 P+ ++ASAIA+MF GLTVA V GVP GT++GQ++GWR+TFWAV A+G+VA +A A L+P Sbjct: 159 PENRRASAIAMMFMGLTVAIVTGVPIGTYIGQIFGWRATFWAVGALGIVAFVAIAVLLPN 218 Query: 181 SDDRQ-DADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 + + A ++RVLG ++L+ MT LG+GG F AFT++APIL D+TGF +VS Sbjct: 219 TLKKAPPASIFDQVRVLGSGRLLIVFAMTALGYGGTFVAFTFLAPILQDVTGFSESSVSL 278 Query: 240 ILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLFSFTS 285 IL+L+G+ + GN+ GGK A+ + L+ L A VLV+FSFT+ Sbjct: 279 ILVLYGIAIAAGNIGGGKIANHNPVKALIGLFALQAIVLVIFSFTA 324 >STM0257 [G] COG2814 Arabinose efflux permease Sty Salmonella typhimurium LT2 Length = 391 Score = 290 bits (743), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 158/293 (53%), Positives = 213/293 (72%), Gaps = 2/293 (0%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+AL+AL ISAFAIGTTEFVI+GL+P +A L +L SAG+LV+ YALGV +GAP++TA Sbjct: 1 MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTA 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG+LPRK LLV+LMVLF GN+ AP Y TL+++R++ +HG FF +GS +AT LV Sbjct: 61 LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 PKEK ASAIA+MF GLTVA V GVP GT++GQ +GWR TF AVS +GV+AL+++ L+P Sbjct: 121 PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA 180 Query: 181 S-DDRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 + R A R +++VL P++LL +T LG+GGVF AFT++AP++ D+ GF P AVS Sbjct: 181 NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW 240 Query: 240 ILLLFGVGLVGGNLLGGKFADKY-LMPTLVISLVLLAGVLVLFSFTSHYKLAA 291 ILL +GV + GN+ GGK ADK+ +P L L +L++F T+ + AA Sbjct: 241 ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAA 293 >PA4355 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aeruginosa Length = 388 Score = 280 bits (717), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 152/292 (52%), Positives = 199/292 (68%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP +L LA+SAFAIGTTEFVIMGLLP+VA +L ++ SAG L++GYA V GAPL+ Sbjct: 1 MPASLLVLALSAFAIGTTEFVIMGLLPQVAGDLRVSIPSAGWLISGYAFAVAFGAPLMAM 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 T +L RK L++LM +F++GN+ CA+A +Y LM++RIV + HGAFFG+GSVVA LV Sbjct: 61 ATARLERKKALLALMGIFIVGNLLCAVAANYGLLMLARIVTALCHGAFFGIGSVVAASLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 ++ASA+ALMFTGLT+ANVLGVP GT LGQ GWR+TFW V+ IGVVA + A ++P Sbjct: 121 APNRRASAVALMFTGLTLANVLGVPLGTALGQEAGWRATFWVVTLIGVVAFVGLARVLPN 180 Query: 181 SDDRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSPI 240 + + D R E+ L P + L L TVL +FA FTY+AP+L ++TG P V+ Sbjct: 181 DREEEKVDLRQEMSALKNPSLWLALGTTVLFAASMFALFTYVAPLLGEVTGVSPRGVTWT 240 Query: 241 LLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLFSFTSHYKLAAS 292 LLL GVGL GN++GG+ AD L T+ +A V LFS+TS L A Sbjct: 241 LLLIGVGLTVGNVIGGRLADWRLGTTMAAVFAAMALVSALFSWTSQALLPAE 292