BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0083.p (389 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr4084 Non COG 423 e-118 mlr2770 Non COG 363 e-100 AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ... 350 3e-96 SMb20071 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium... 337 2e-92 STM0257 [G] COG2814 Arabinose efflux permease Sty Salmonella typ... 330 4e-90 >mlr4084 Non COG Length = 397 Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust. Identities = 227/359 (63%), Positives = 281/359 (78%), Gaps = 7/359 (1%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MPIAL+ALA AF IG TEFVIMGLL +V+ +LG ++S+AG L++GYALGV +GAPL+T Sbjct: 1 MPIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTI 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG PRKT+L++LM +F +GN+ CA+APDY LM +RI+ +F+HG FFGVGSVVATGLV Sbjct: 61 ATGNWPRKTVLLALMAIFTLGNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 K+ASAIALMFTGLT+AN+LGVPFGTWLGQ +GWR+TFWAV+A+G+ A LVPR Sbjct: 121 APNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFWAVTAVGLAAFAVILALVPR 180 Query: 181 SD-DRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 S + +D R++L VL R VLLGL TVLG+ GVFA FTYIAP+LT+I+GF+ AVSP Sbjct: 181 SQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSP 240 Query: 240 ILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLFSFTSHYKL-----VGLLG 294 ILL+FG GL+ GNL GGK AD++L+P ++ SLV+LA VL SF H ++ VGLLG Sbjct: 241 ILLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLG 300 Query: 295 AAAFATVPPLQMRVLEKATGA-PNLASSVNIAAFNLGNALGAWLGGVTIDHGPGLHAVS 352 AAAFATV PLQM VL+KA GA +LASS NIAAFNLGNA GAWLGG I HG GL +++ Sbjct: 301 AAAFATVAPLQMWVLDKAQGAGQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSLT 359 >mlr2770 Non COG Length = 391 Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/394 (53%), Positives = 277/394 (70%), Gaps = 10/394 (2%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+ + ALAI++F IGTTEFVIMGLLPEVAA+L ++ SAGLLVTGYALGV GAP+V Sbjct: 1 MPLPILALAIASFCIGTTEFVIMGLLPEVAADLRVSIPSAGLLVTGYALGVVFGAPIVAM 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 T LPRK +LV L FV+GN+ CAIAPDY TLM +R+ +F HGAFFG+GSVVA LV Sbjct: 61 ATAHLPRKPVLVGLAASFVVGNLFCAIAPDYWTLMAARVFTAFGHGAFFGIGSVVAASLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 P+ K+ASA+ALMF GLT++N+LGVP GT LG+ +GWRSTF AV IG++++ A A+LVP Sbjct: 121 PRNKRASAMALMFAGLTLSNILGVPAGTALGEAFGWRSTFIAVVGIGLISVAAIAWLVP- 179 Query: 181 SD--DRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVS 238 SD + R ELRVLGR QV L +L+ L +FA FTYI P LTD++G AV+ Sbjct: 180 SDVAEPSGGGLRGELRVLGRLQVWLAMLIASLASASLFAVFTYIKPYLTDVSGLSTSAVT 239 Query: 239 PILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLF-SF----TSHYKLVGLL 293 +LLLFG G+ GN++GG+ AD LMPT++ +L+L+A + + F F + +V L Sbjct: 240 WVLLLFGAGMTIGNIIGGRLADWKLMPTVIGTLLLMAVLFIGFMQFGAIASVAIGIVFLW 299 Query: 294 GAAAFATVPPLQMRVLEKATGAPNLASSVNIAAFNLGNALGAWLGGVTIDHGPGLHAVSL 353 G F VPPLQ+RV+E A+ PNLA+++N AFN+GNA GAW+GGV + G + L Sbjct: 300 GLLIFVVVPPLQIRVVEAASEGPNLAATLNQGAFNVGNASGAWIGGVALSAGVSYAHLPL 359 Query: 354 VAALITAGGLVVALISWKLDRKTAPAVSLKAANK 387 V A++ + VA++S LDR+ AP V L+AA + Sbjct: 360 VGAVLALLAVTVAVLSQALDRR-AP-VPLQAAAE 391 >AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 350 bits (899), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 199/395 (50%), Positives = 278/395 (70%), Gaps = 12/395 (3%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+A++AL I+A+AIGTTEFVI+GLLP VA +L TL AGL+V+ YALGV GAP++TA Sbjct: 39 MPLAIFALTIAAYAIGTTEFVIVGLLPTVANDLHITLPLAGLIVSVYALGVTFGAPILTA 98 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG++ RK LL+ LM LF++GN A++P Y L+++R++A+F+HG FF VG+ +A LV Sbjct: 99 LTGRIERKPLLLGLMALFIVGNTAAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLV 158 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 P+ ++ASAIA+MF GLTVA V GVP GT++GQ++GWR+TFWAV A+G+VA +A A L+P Sbjct: 159 PENRRASAIAMMFMGLTVAIVTGVPIGTYIGQIFGWRATFWAVGALGIVAFVAIAVLLPN 218 Query: 181 SDDRQ-DADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 + + A ++RVLG ++L+ MT LG+GG F AFT++APIL D+TGF +VS Sbjct: 219 TLKKAPPASIFDQVRVLGSGRLLIVFAMTALGYGGTFVAFTFLAPILQDVTGFSESSVSL 278 Query: 240 ILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLFSFTSHYKLVGL-----LG 294 IL+L+G+ + GN+ GGK A+ + L+ L A VLV+FSFT+ ++ L LG Sbjct: 279 ILVLYGIAIAAGNIGGGKIANHNPVKALIGLFALQAIVLVIFSFTAVSPVLTLITLVALG 338 Query: 295 AAAFATVPPLQMRVL----EKATGAPNLASSVNIAAFNLGNALGAWLGGVTIDHGPGLHA 350 +FA VP LQ+ V+ E GA ++AS++NIAAFNLG ALGAWLGGV ++ GL A Sbjct: 339 FLSFANVPGLQLYVVQLAKEHRPGAVDVASALNIAAFNLGIALGAWLGGVVVESPMGLGA 398 Query: 351 VSLVAALITAGGLVVALISWKLDRKTAPAVSLKAA 385 V A++ A L++ + S LDR+ AP LKAA Sbjct: 399 TPWVGAILVAVALLLTIWSGALDRRAAPV--LKAA 431 >SMb20071 [G] COG2814 Arabinose efflux permease Sme Sinorhizobium meliloti Length = 397 Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 193/387 (49%), Positives = 272/387 (70%), Gaps = 10/387 (2%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+A++AL I+A+AIGTTEFVI+GLLP VA +L TL AGL+V+ YALGV GAP++TA Sbjct: 1 MPLAIFALTIAAYAIGTTEFVIVGLLPTVATDLAITLPLAGLIVSVYALGVTFGAPVLTA 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG++ RK LL+ LM LF+ GN A++P+Y L+++R++++F+HG FF VGS +A LV Sbjct: 61 LTGRIERKPLLLGLMALFIGGNTAAALSPNYEVLLVARVLSAFAHGVFFSVGSTIAADLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 P+ ++ASAIA+MF GLTVA V GVP GT++GQ++GWR+TFW VS +GVVA A L+P Sbjct: 121 PENRRASAIAMMFMGLTVAIVTGVPIGTYIGQVFGWRATFWGVSGLGVVAFAGIATLLPG 180 Query: 181 SDDR-QDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 + + A ++RVLG ++L+ MT LG+GG F AFT++APIL ++TGF +VS Sbjct: 181 TLAKAAPASLLDQVRVLGSGRLLIVFAMTALGYGGTFVAFTFLAPILQEVTGFSERSVSL 240 Query: 240 ILLLFGVGLVGGNLLGGKFADKYLMPTLVISLVLLAGVLVLFSFTSHYKLVGL-----LG 294 IL+L+GV + GN+ GG+ A+ + L+ +L A VLV+FSFT+ ++ L LG Sbjct: 241 ILVLYGVAIAIGNIAGGRIANTNPVKALIGLFLLQALVLVIFSFTAVSPVLTLVTLAALG 300 Query: 295 AAAFATVPPLQMRV----LEKATGAPNLASSVNIAAFNLGNALGAWLGGVTIDHGPGLHA 350 +FA VP LQ+ V +E GA ++AS++NIAAFNLG ALGAWLGG+ +D GL A Sbjct: 301 FLSFANVPGLQLYVVQLAMEHRPGAVDVASALNIAAFNLGIALGAWLGGMVVDSPFGLSA 360 Query: 351 VSLVAALITAGGLVVALISWKLDRKTA 377 V A++ +G L++ L S LDR+ A Sbjct: 361 TPWVGAILVSGALLLTLWSGVLDRRGA 387 >STM0257 [G] COG2814 Arabinose efflux permease Sty Salmonella typhimurium LT2 Length = 391 Score = 330 bits (845), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 192/385 (49%), Positives = 265/385 (68%), Gaps = 12/385 (3%) Query: 1 MPIALWALAISAFAIGTTEFVIMGLLPEVAANLGTTLSSAGLLVTGYALGVFVGAPLVTA 60 MP+AL+AL ISAFAIGTTEFVI+GL+P +A L +L SAG+LV+ YALGV +GAP++TA Sbjct: 1 MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLVSIYALGVAIGAPVLTA 60 Query: 61 TTGKLPRKTLLVSLMVLFVIGNIGCAIAPDYTTLMISRIVASFSHGAFFGVGSVVATGLV 120 TG+LPRK LLV+LMVLF GN+ AP Y TL+++R++ +HG FF +GS +AT LV Sbjct: 61 LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTGLAHGVFFSIGSTIATSLV 120 Query: 121 PKEKQASAIALMFTGLTVANVLGVPFGTWLGQMYGWRSTFWAVSAIGVVALLATAYLVPR 180 PKEK ASAIA+MF GLTVA V GVP GT++GQ +GWR TF AVS +GV+AL+++ L+P Sbjct: 121 PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA 180 Query: 181 S-DDRQDADFRSELRVLGRPQVLLGLLMTVLGFGGVFAAFTYIAPILTDITGFQPGAVSP 239 + R A R +++VL P++LL +T LG+GGVF AFT++AP++ D+ GF P AVS Sbjct: 181 NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW 240 Query: 240 ILLLFGVGLVGGNLLGGKFADKY-LMPTLVISLVLLAGVLVLFSFTSHYKLVGL-----L 293 ILL +GV + GN+ GGK ADK+ +P L L +L++F T+ + L + Sbjct: 241 ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM 300 Query: 294 GAAAFATVPPLQMRVLEKAT----GAPNLASSVNIAAFNLGNALGAWLGGVTIDHGPGLH 349 G AF VP LQ+ V++KA A ++AS +NIAAFN+G ALG+ +GG T++H GL Sbjct: 301 GVFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEH-YGLA 359 Query: 350 AVSLVAALITAGGLVVALISWKLDR 374 + ALI ++ +S +LD+ Sbjct: 360 QTPWIGALIVLVAFLLMGVSGRLDK 384