BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0075.p (384 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1221 [R] COG2262 GTPases Rso Ralstonia solanacearum 452 e-127 PA4943 [R] COG2262 GTPases Pae Pseudomonas aeruginosa 406 e-113 VC0348 [R] COG2262 GTPases Vch Vibrio cholerae 400 e-111 hflX [R] COG2262 GTPases Eco Escherichia coli K12 399 e-111 ZhflX [R] COG2262 GTPases EcZ Escherichia coli O157:H7 EDL933 397 e-110 >RSc1221 [R] COG2262 GTPases Rso Ralstonia solanacearum Length = 417 Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust. Identities = 247/377 (65%), Positives = 294/377 (77%), Gaps = 8/377 (2%) Query: 2 RAALVGLDFGKSDFAASLDELFLLAKSAGAEPVTTVTGKRASPDAALFVGSGKAQEIADA 61 RA LV +DFGK DF SL EL LLA +AG+EPV VTG+R+ PDAALF+G+GKA+E+ A Sbjct: 13 RAILVAVDFGKHDFQESLSELALLASTAGSEPVRAVTGRRSRPDAALFIGAGKAEEVKIA 72 Query: 62 VADLQLDIVIFNHALSPAQQRNLERVLKTRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 + +IVIFNHALSPAQQRNLER V+DRT LILDIF+QRA+SH GKVQVELA++ Sbjct: 73 ADEDDAEIVIFNHALSPAQQRNLERFFGRHVVDRTGLILDIFSQRAQSHVGKVQVELARV 132 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPG-ETQLETDRRLLGDRVKALRAQLAKLHRQHATQ 180 ++ A+RL+R W+HLERQKGGIG+RG E QLE DRR+L +R K L A+L +L RQH TQ Sbjct: 133 RYQASRLVRAWSHLERQKGGIGMRGGPGERQLELDRRMLDERAKRLSAELDRLQRQHDTQ 192 Query: 181 RRARGRNDTFSVSLVGYTNAGKSTVFNAMAKAGVYAANQLFATLDTTSRRVYLGEVGHVV 240 RRAR RND FSVSLVGYTNAGKST+FNA+ KA YAANQLFATLDTTSRR+YL +G+VV Sbjct: 193 RRARSRNDAFSVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVV 252 Query: 241 ISDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGAD 300 +SDTVGFIR+LP QLVAAFRATLEET+HAD+LLHVVDAAS V+ EQ+EQV+ VL EI A Sbjct: 253 LSDTVGFIRDLPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQMEQVDRVLAEINAS 312 Query: 301 HIPQILVWNKIDAAD----LEPAIEHDEYGRIHRVFVSAKTGAGLDLLRQAIADS---LR 353 IPQILV NKIDAA+ P IE DE G + RVFVSA GAGL+LLR+A+ ++ LR Sbjct: 313 DIPQILVMNKIDAAEELRSQGPRIERDEAGAVRRVFVSALEGAGLELLREALVETAIRLR 372 Query: 354 SSIEVRRGARSQTFDSQ 370 R G FD++ Sbjct: 373 EHPSSRDGDFDPRFDTR 389 >PA4943 [R] COG2262 GTPases Pae Pseudomonas aeruginosa Length = 433 Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/352 (59%), Positives = 264/352 (75%), Gaps = 1/352 (0%) Query: 2 RAALVGLDFGKSDFAASLDELFLLAKSAGAEPVTTVTGKRASPDAALFVGSGKAQEIADA 61 +A LV L+ + E L +SAGAE V V+ R P A +GSGK +E+ D Sbjct: 11 QAVLVHLEGQNPEAREDPQEFQELVRSAGAETVAFVSVSRHQPSAKYLIGSGKVEELHDL 70 Query: 62 VADLQLDIVIFNHALSPAQQRNLERVLKTRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +++VIFNH L+P+Q+RNLER + RVLDRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 71 VKAENVELVIFNHTLTPSQERNLERAFECRVLDRTGLILDIFAQRARTHEGKLQVELAQL 130 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGDRVKALRAQLAKLHRQHATQR 181 +H++TRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL R++ ++ +L K+ Q R Sbjct: 131 EHMSTRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRVRIRQIKQRLEKVRSQREQAR 190 Query: 182 RARGRNDTFSVSLVGYTNAGKSTVFNAMAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 R R R D +VSLVGYTNAGKST+FN++ + VYAANQLFATLD T RR+ L ++G VV+ Sbjct: 191 RGRKRADIPAVSLVGYTNAGKSTLFNSLTASEVYAANQLFATLDPTLRRLQLDDLGPVVL 250 Query: 242 SDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH+LV AFRATLEE+ +ADLLLHV+DA P R Q+EQV VL EIGA+ Sbjct: 251 ADTVGFIRHLPHKLVEAFRATLEESSNADLLLHVIDAYEPERDAQVEQVLAVLGEIGANE 310 Query: 302 IPQILVWNKID-AADLEPAIEHDEYGRIHRVFVSAKTGAGLDLLRQAIADSL 352 +P + V+NK+D +EP I+ D+ G+ RV++SA+TG GLDLLRQAIA+ L Sbjct: 311 LPMLEVYNKVDLLPSVEPHIQRDDSGKPVRVWLSAQTGEGLDLLRQAIAELL 362 >VC0348 [R] COG2262 GTPases Vch Vibrio cholerae Length = 429 Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/356 (58%), Positives = 265/356 (74%), Gaps = 1/356 (0%) Query: 2 RAALVGLDFGKSDFAASLDELFLLAKSAGAEPVTTVTGKRASPDAALFVGSGKAQEIADA 61 RA LV ++F + L E +L SAG + VTG R +P FVG GKAQEIA+A Sbjct: 10 RAVLVHVNFTQRGEWEDLSECKMLISSAGVTTLHVVTGSRQTPHPKYFVGEGKAQEIAEA 69 Query: 62 VADLQLDIVIFNHALSPAQQRNLERVLKTRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V ++VIFNHALSPAQ+RNLER+ + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VQMHVANVVIFNHALSPAQERNLERLCQCRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGDRVKALRAQLAKLHRQHATQR 181 +H++TRLIRGWTHLERQKGGIGLRGPGETQLETDRRLL +R+KA+ +L K+ +Q R Sbjct: 130 RHISTRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLRERIKAILRRLEKVAKQREQGR 189 Query: 182 RARGRNDTFSVSLVGYTNAGKSTVFNAMAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 RAR R + ++SLVGYTNAGKST+FN + +AGVYAA+QLFATLD T R++ L +VG V+ Sbjct: 190 RARSRAEIPTISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLVDVGPAVL 249 Query: 242 SDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH LVAAF+ATL+ET AD+LLHVVDA+ E I+ V VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVETVLQEIDAHE 309 Query: 302 IPQILVWNKIDAADLE-PAIEHDEYGRIHRVFVSAKTGAGLDLLRQAIADSLRSSI 356 +P +LV NKID + + P IE D+ G V++SA GAG +LL +A+++ L S + Sbjct: 310 VPTLLVMNKIDNLEEQSPRIERDDEGVPRVVWISAMQGAGTELLFEALSERLASQV 365 >hflX [R] COG2262 GTPases Eco Escherichia coli K12 Length = 426 Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/356 (57%), Positives = 262/356 (73%), Gaps = 1/356 (0%) Query: 2 RAALVGLDFGKSDFAASLDELFLLAKSAGAEPVTTVTGKRASPDAALFVGSGKAQEIADA 61 +A LV + F + L E L SAG E + +TG R +P FVG GKA EIA+A Sbjct: 10 QAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEA 69 Query: 62 VADLQLDIVIFNHALSPAQQRNLERVLKTRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +V+F+HALSPAQ+RNLER+ + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGDRVKALRAQLAKLHRQHATQR 181 +HLATRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL +R+ ++++L ++ +Q R Sbjct: 130 RHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGR 189 Query: 182 RARGRNDTFSVSLVGYTNAGKSTVFNAMAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 ++R + D +VSLVGYTNAGKST+FN + +A VYAA+QLFATLD T RR+ + +VG V+ Sbjct: 190 QSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVL 249 Query: 242 SDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH LVAAF+ATL+ET A LLLHV+DAA E IE VN VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHE 309 Query: 302 IPQILVWNKIDA-ADLEPAIEHDEYGRIHRVFVSAKTGAGLDLLRQAIADSLRSSI 356 IP +LV NKID D EP I+ DE + +RV++SA+TGAG+ L QA+ + L + Sbjct: 310 IPTLLVMNKIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQLFQALTERLSGEV 365 >ZhflX [R] COG2262 GTPases EcZ Escherichia coli O157:H7 EDL933 Length = 426 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/356 (57%), Positives = 261/356 (73%), Gaps = 1/356 (0%) Query: 2 RAALVGLDFGKSDFAASLDELFLLAKSAGAEPVTTVTGKRASPDAALFVGSGKAQEIADA 61 +A LV + F + L E L SAG E + +TG R +P FVG GKA EIA+A Sbjct: 10 QAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEA 69 Query: 62 VADLQLDIVIFNHALSPAQQRNLERVLKTRVLDRTSLILDIFAQRAKSHEGKVQVELAQL 121 V +V+F+HALSPAQ+RNLER+ + RV+DRT LILDIFAQRA++HEGK+QVELAQL Sbjct: 70 VKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQL 129 Query: 122 QHLATRLIRGWTHLERQKGGIGLRGPGETQLETDRRLLGDRVKALRAQLAKLHRQHATQR 181 +HLATRL+RGWTHLERQKGGIGLRGPGETQLETDRRLL +R+ ++++L ++ +Q R Sbjct: 130 RHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGR 189 Query: 182 RARGRNDTFSVSLVGYTNAGKSTVFNAMAKAGVYAANQLFATLDTTSRRVYLGEVGHVVI 241 ++R + D +VSLVGYTNAGKST+FN + +A VYAA+QLFATLD T RR+ + +VG V+ Sbjct: 190 QSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVL 249 Query: 242 SDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDAASPVRMEQIEQVNLVLKEIGADH 301 +DTVGFIR LPH LVAAF+ATL+ET A LLLHV+DAA E IE VN VL+EI A Sbjct: 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHE 309 Query: 302 IPQILVWNKIDA-ADLEPAIEHDEYGRIHRVFVSAKTGAGLDLLRQAIADSLRSSI 356 IP +LV NKID D EP I+ DE + RV++SA+TGAG+ L QA+ + L + Sbjct: 310 IPTLLVMNKIDMLEDFEPRIDRDEENKPIRVWLSAQTGAGIPQLFQALTERLSGEV 365