BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0073.p (248 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1219 [R] COG1160 Predicted GTPases Rso Ralstonia solanacearum 383 e-106 NMA1063 [R] COG1160 Predicted GTPases NmA Neisseria meningitidis... 341 7e-94 NMB0852 [R] COG1160 Predicted GTPases Nme Neisseria meningitidis... 338 5e-93 HI0136 [R] COG1160 Predicted GTPases Hin Haemophilus influenzae 304 2e-82 PM0105 [R] COG1160 Predicted GTPases Pmu Pasteurella multocida 298 5e-81 >RSc1219 [R] COG1160 Predicted GTPases Rso Ralstonia solanacearum Length = 447 Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/248 (73%), Positives = 212/248 (85%) Query: 1 LLGEERVIAFDMPGTTRDSIEIPFERDGKQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQS 60 L+GEERVIAFDMPGTTRD+I + FER+GK YTLIDTAG+R+RGKVFEAIEKFSVVKTLQS Sbjct: 200 LIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQS 259 Query: 61 ISETNVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGLQSDRRDEIKMDLERK 120 I++ NVV+LLLDAQQDIS+QDAHIAGF++ESGRALV+GVNKWDGL RD IK D+ERK Sbjct: 260 IADANVVVLLLDAQQDISDQDAHIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDMERK 319 Query: 121 LSFLSFAKFHFISALKSTGIGPVMKSIDSAYAAAMSNLTTPKLTRALIEAVEHQQPRRKG 180 L FLSFA H+ISA + TGIG +MKS+D AYAAAM L TPKLTR L EAVE QQPRR G Sbjct: 320 LQFLSFANVHYISAKQRTGIGALMKSVDDAYAAAMVKLPTPKLTRVLQEAVEFQQPRRAG 379 Query: 181 SIRPKLRYAHQGGMNPPIVVIHGNALEGVDDSYKRYLEKHFRETFSLVGTPLRIEFRSSK 240 RPKLRYAHQGG NPPIVVIHGNAL + ++Y+R+LE FR+ F L GTPLRIEFR++K Sbjct: 380 VSRPKLRYAHQGGSNPPIVVIHGNALSNIPETYRRFLEGRFRDAFQLKGTPLRIEFRTNK 439 Query: 241 NPFARPDK 248 NP+A+ ++ Sbjct: 440 NPYAQSNE 447 >NMA1063 [R] COG1160 Predicted GTPases NmA Neisseria meningitidis Z2491 Length = 485 Score = 341 bits (875), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 157/247 (63%), Positives = 197/247 (79%) Query: 1 LLGEERVIAFDMPGTTRDSIEIPFERDGKQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQS 60 +LGEERVIAFDM GTTRDSI I FER+GK +T+IDTAG+RRRGKV EA+EKFSV+K +Q+ Sbjct: 195 ILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQA 254 Query: 61 ISETNVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGLQSDRRDEIKMDLERK 120 + NV +L+LDAQQDI++QDA IAGF LE+GRALVV VNKWDG+ +RR+++K D+ RK Sbjct: 255 VEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRK 314 Query: 121 LSFLSFAKFHFISALKSTGIGPVMKSIDSAYAAAMSNLTTPKLTRALIEAVEHQQPRRKG 180 L FL FAKFHFISALK GI + SI +AY AAM + TPK+TR L A+E QQP R G Sbjct: 315 LYFLDFAKFHFISALKERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAG 374 Query: 181 SIRPKLRYAHQGGMNPPIVVIHGNALEGVDDSYKRYLEKHFRETFSLVGTPLRIEFRSSK 240 +RPK+RYAHQGGMNPP++V+HGN+L + DSY RYL + FR+ F+L GTPLRI++ S+ Sbjct: 375 LVRPKMRYAHQGGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSE 434 Query: 241 NPFARPD 247 NP+ D Sbjct: 435 NPYENAD 441 >NMB0852 [R] COG1160 Predicted GTPases Nme Neisseria meningitidis MC58 Length = 485 Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 155/243 (63%), Positives = 195/243 (80%) Query: 1 LLGEERVIAFDMPGTTRDSIEIPFERDGKQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQS 60 +LGEERVI FDM GTTRDSI I FER+GK +T+IDTAG+RRRGKV EA+EKFSV+K +Q+ Sbjct: 195 ILGEERVITFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQA 254 Query: 61 ISETNVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGLQSDRRDEIKMDLERK 120 + NV +L+LDAQQDI++QDA IAGF LE+GRALVV VNKWDG+ +RR+++K D+ RK Sbjct: 255 VEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRK 314 Query: 121 LSFLSFAKFHFISALKSTGIGPVMKSIDSAYAAAMSNLTTPKLTRALIEAVEHQQPRRKG 180 L FL FAKFHFISALK GI + SI +AY AAM + TPK+TR L A+E QQP R G Sbjct: 315 LYFLDFAKFHFISALKERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAG 374 Query: 181 SIRPKLRYAHQGGMNPPIVVIHGNALEGVDDSYKRYLEKHFRETFSLVGTPLRIEFRSSK 240 +RPK+RYAHQGGMNPP++V+HGN+L + DSY RYL + FR+ F+L GTPLRI++ S+ Sbjct: 375 LVRPKMRYAHQGGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSE 434 Query: 241 NPF 243 NP+ Sbjct: 435 NPY 437 >HI0136 [R] COG1160 Predicted GTPases Hin Haemophilus influenzae Length = 504 Score = 304 bits (778), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 137/244 (56%), Positives = 185/244 (75%) Query: 1 LLGEERVIAFDMPGTTRDSIEIPFERDGKQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQS 60 +LGE+RV+ FDMPGTTRDSI IP ERDG+QYTLIDTAG+R+RGKV A+EKFSV+KTLQ+ Sbjct: 235 ILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQA 294 Query: 61 ISETNVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGLQSDRRDEIKMDLERK 120 I + NVVLL +DA+++IS+QD + GF+L +GR+LV+ VNKWDGL D +D +K +L+R+ Sbjct: 295 IQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDQDVKDRVKSELDRR 354 Query: 121 LSFLSFAKFHFISALKSTGIGPVMKSIDSAYAAAMSNLTTPKLTRALIEAVEHQQPRRKG 180 L F+ FA+ HFISAL +G+G + SI AYA A +TT LTR L A + QP G Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 181 SIRPKLRYAHQGGMNPPIVVIHGNALEGVDDSYKRYLEKHFRETFSLVGTPLRIEFRSSK 240 R KL+YAH GG NPPI+V+HGN ++ + DSYKRYL ++R++ ++G+P+R+ F+ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 241 NPFA 244 NPFA Sbjct: 475 NPFA 478 >PM0105 [R] COG1160 Predicted GTPases Pmu Pasteurella multocida Length = 510 Score = 298 bits (764), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 132/244 (54%), Positives = 183/244 (75%) Query: 1 LLGEERVIAFDMPGTTRDSIEIPFERDGKQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQS 60 +LGE+RV+ +D+PGTTRDSI IP ERDG+ YT+IDTAG+R+RGKV A+EKFSV+KTLQ+ Sbjct: 241 ILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQA 300 Query: 61 ISETNVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGLQSDRRDEIKMDLERK 120 I + NVVLL +DA++ +S+QD + GF+L +GR+LV+ VNKWDGL D +D++K +L+R+ Sbjct: 301 IQDANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKWDGLNQDIKDQVKSELDRR 360 Query: 121 LSFLSFAKFHFISALKSTGIGPVMKSIDSAYAAAMSNLTTPKLTRALIEAVEHQQPRRKG 180 L F+ FA+ HFISAL +G+G + SI AYA A +TT LTR L A + QP G Sbjct: 361 LDFIDFARVHFISALHGSGVGNLFDSIQEAYACATQKMTTSMLTRILQMATDEHQPPMMG 420 Query: 181 SIRPKLRYAHQGGMNPPIVVIHGNALEGVDDSYKRYLEKHFRETFSLVGTPLRIEFRSSK 240 R KL+YAH GG NPPI+V+HGN ++ + DSYKRYL ++R + ++G+P+R+ F+ Sbjct: 421 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRRSLKIIGSPIRLLFQEGN 480 Query: 241 NPFA 244 NPFA Sbjct: 481 NPFA 484