BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0067.p         (307 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO2880 [S] COG1426 Uncharacterized protein conserved in bacteri...    62   2e-09

>YPO2880 [S] COG1426 Uncharacterized protein conserved in bacteria Ype
           Yersinia pestis
          Length = 345

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 52/322 (16%)

Query: 11  LEGDNYAALPGPVIVRGFVRAYAKLLGLDANALVALLPQDGLVQTGQITPQRTLSTPFSE 70
           +E DN  A       RG++R+YAKL+ L  + L+ +L +   V+  ++ P ++ S     
Sbjct: 47  IEEDNAQANLASTFHRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFS----- 101

Query: 71  SPLPLGNRSKVSPGLVVGGVLVVLLV--GAAGVIHRTDAFNDVPQLAWLKQGARTASEEP 128
               LG + K   G ++    +++LV  G  G     +      ++A +   +     + 
Sbjct: 102 ----LGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQN 157

Query: 129 AAAPV-------QADVQQDLPPEVQDGSDKSKLEKVESAVTSAASSASSAITNVSERV-- 179
              PV        A    D P  V +G          SA+T++A+++S   T  +E V  
Sbjct: 158 GGQPVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDT 217

Query: 180 -------------ASAVAPS-APQPAXAAAKTPAPTAEPAQPKVAAAPVNPGSPVTGSLN 225
                        ++AV+PS  PQP     + P PTA+                V+GS  
Sbjct: 218 ANTNTTMHQEGAASAAVSPSQVPQPGMPTGQPPLPTADAG--------------VSGS-- 261

Query: 226 ISNSKDLLRLTFREDSWVEIRRGDKSTMISRLLKAGTTESFDINEPVTLVVGNAAGVDAS 285
            ++S   L + F  D W+++      T+ S + K G   +     P  L +G    +  S
Sbjct: 262 -ASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTIS 320

Query: 286 LRGSRLDLETGSSSN-VARLSL 306
            +G+ +DL     +N VARL++
Sbjct: 321 YQGNPVDLSKFIKANRVARLTV 342