BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0063.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1211 [F] COG0105 Nucleoside diphosphate kinase Rso Ralstonia ...   244   4e-65
PA3807 [F] COG0105 Nucleoside diphosphate kinase Pae Pseudomonas...   209   1e-54
XF0458 [F] COG0105 Nucleoside diphosphate kinase Xfa Xylella fas...   206   1e-53
YPO2883 [F] COG0105 Nucleoside diphosphate kinase Ype Yersinia p...   199   2e-51
NMB1307 [F] COG0105 Nucleoside diphosphate kinase Nme Neisseria ...   197   6e-51

>RSc1211 [F] COG0105 Nucleoside diphosphate kinase Rso Ralstonia
           solanacearum
          Length = 141

 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 124/141 (87%), Positives = 136/141 (96%)

Query: 1   MAIERTLSIIKPDAVAKNVIGQIYTRFENAGLKIIAARMIHLSRAEAEGFYAVHRERPFF 60
           MAIERTLSIIKPDAVAKNVIGQIY RFE AGLK++AA+MIHLSRAEAE FYAVH+ERPFF
Sbjct: 1   MAIERTLSIIKPDAVAKNVIGQIYARFEGAGLKVVAAKMIHLSRAEAEQFYAVHKERPFF 60

Query: 61  KDLVDFMVSGPVIVQALEGENAILKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSD 120
           KDLVDFM+SGPV+VQALEGE+AI+K+RDLMGATDPKKAEKGTIRADFADSIDANAVHGSD
Sbjct: 61  KDLVDFMISGPVMVQALEGESAIVKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSD 120

Query: 121 AAETAKVEISYFFPALNIYSR 141
           AAETA VE+++FFP LNIYSR
Sbjct: 121 AAETAAVEVAFFFPGLNIYSR 141


>PA3807 [F] COG0105 Nucleoside diphosphate kinase Pae Pseudomonas
           aeruginosa
          Length = 143

 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 118/141 (83%)

Query: 1   MAIERTLSIIKPDAVAKNVIGQIYTRFENAGLKIIAARMIHLSRAEAEGFYAVHRERPFF 60
           MA++RTLSIIKPDAV+KNVIG+I TRFE AGL+++AA+M+ LS  EA GFYA H+ERPFF
Sbjct: 1   MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFF 60

Query: 61  KDLVDFMVSGPVIVQALEGENAILKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSD 120
           KDLV FM SGPV+VQ LEGE+AI K+R+LMGATDPKKA+ GTIRADFA SID NAVHGSD
Sbjct: 61  KDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSD 120

Query: 121 AAETAKVEISYFFPALNIYSR 141
           +  +A  EI+YFF A  +  R
Sbjct: 121 SEASAAREIAYFFAATEVCER 141


>XF0458 [F] COG0105 Nucleoside diphosphate kinase Xfa Xylella fastidiosa
           9a5c
          Length = 141

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 117/141 (82%)

Query: 1   MAIERTLSIIKPDAVAKNVIGQIYTRFENAGLKIIAARMIHLSRAEAEGFYAVHRERPFF 60
           M +ERTLSIIKPDAVAKNVIG IY+RFE AGLK++AA+   LSR EAEGFYAVHR+RPFF
Sbjct: 1   MVLERTLSIIKPDAVAKNVIGDIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRDRPFF 60

Query: 61  KDLVDFMVSGPVIVQALEGENAILKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSD 120
             LV+FM+SGPV++Q LE ENA+ +HR+L+GAT+PK A  GTIRADFA+SI+ANA HGSD
Sbjct: 61  NALVEFMISGPVMIQVLESENAVARHRELLGATNPKDAALGTIRADFAESIEANAAHGSD 120

Query: 121 AAETAKVEISYFFPALNIYSR 141
           + E A +E++YFF A  I  R
Sbjct: 121 SVENAAIEVAYFFAATEIILR 141


>YPO2883 [F] COG0105 Nucleoside diphosphate kinase Ype Yersinia pestis
          Length = 142

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 114/141 (80%)

Query: 1   MAIERTLSIIKPDAVAKNVIGQIYTRFENAGLKIIAARMIHLSRAEAEGFYAVHRERPFF 60
           MA+ERT SIIKP+AVA N IG IY RFE AG KIIAA+M+HL++ +AEGFYA H+ RPFF
Sbjct: 1   MALERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFF 60

Query: 61  KDLVDFMVSGPVIVQALEGENAILKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSD 120
             LV+FM SGP++VQ LEGENA+ +HRD+MGAT+P  A  GT+RADF+DS  ANAVHGSD
Sbjct: 61  DGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSD 120

Query: 121 AAETAKVEISYFFPALNIYSR 141
           A E+A+ EI+YFF A  I+ R
Sbjct: 121 AVESAQREIAYFFAADEIFPR 141


>NMB1307 [F] COG0105 Nucleoside diphosphate kinase Nme Neisseria
           meningitidis MC58
          Length = 141

 Score =  197 bits (501), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 114/141 (80%)

Query: 1   MAIERTLSIIKPDAVAKNVIGQIYTRFENAGLKIIAARMIHLSRAEAEGFYAVHRERPFF 60
           MAIERT+SIIKPDAV KNVIG+IY+RFE  GLKI+AA+M  L+  EA+ FYAVH++RPF+
Sbjct: 1   MAIERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFY 60

Query: 61  KDLVDFMVSGPVIVQALEGENAILKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSD 120
             LV+FM  GPV++Q LEGENA+LK+R+LMGAT+P +A +GTIRADFA S+  NAVHGSD
Sbjct: 61  AGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSD 120

Query: 121 AAETAKVEISYFFPALNIYSR 141
           + E A +EI+YFF    I  R
Sbjct: 121 SVENAALEIAYFFSQTEICPR 141