BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0062.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1210 [R] COG0670 Integral membrane protein, interacts with Ft... 338 8e-93 yccA [R] COG0670 Integral membrane protein, interacts with FtsH ... 137 2e-32 ZyccA [R] COG0670 Integral membrane protein, interacts with FtsH... 135 1e-31 ECs1054 [R] COG0670 Integral membrane protein, interacts with Ft... 135 1e-31 VC1358 [R] COG0670 Integral membrane protein, interacts with Fts... 130 2e-30 >RSc1210 [R] COG0670 Integral membrane protein, interacts with FtsH Rso Ralstonia solanacearum Length = 233 Score = 338 bits (866), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 171/217 (78%), Positives = 196/217 (90%), Gaps = 1/217 (0%) Query: 15 GALA-RNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFYA 73 GALA RNRVLRNTYWLLALSMIPT+LGAW+GV +L AG P++GF++FM VAFGFFYA Sbjct: 17 GALAVRNRVLRNTYWLLALSMIPTILGAWIGVATGFNLMAGRPLMGFLIFMGVAFGFFYA 76 Query: 74 IEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATVA 133 IE+ KNSG+GVA+LLGFTFFMGLMLSRLI LGFSNGA LIMTAFGGTA IF VMATVA Sbjct: 77 IERFKNSGMGVALLLGFTFFMGLMLSRLIGMILGFSNGAALIMTAFGGTATIFAVMATVA 136 Query: 134 TVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQVI 193 TVSKRDFSG+ KWLF GVLV+IV S+ANI+LQLP++ LTISV+AIAIFSAYIL+DVQ+++ Sbjct: 137 TVSKRDFSGLGKWLFMGVLVLIVGSVANIWLQLPSMMLTISVLAIAIFSAYILYDVQRIV 196 Query: 194 NGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 NGGETNY++ATLAIYLDVYNVF NLL+ILGI GGNR+ Sbjct: 197 NGGETNYVTATLAIYLDVYNVFTNLLAILGIFGGNRN 233 >yccA [R] COG0670 Integral membrane protein, interacts with FtsH Eco Escherichia coli K12 Length = 219 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 128/218 (58%), Gaps = 9/218 (4%) Query: 13 NTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFY 72 T L+ ++VLRNTY+LL+L++ + + A L L P G ++ + +G + Sbjct: 11 RTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLML------PSPGLILTLVGMYGLMF 64 Query: 73 AIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATV 132 KT N G+ FT F+G +L ++ L G +I A GGTAL+F + Sbjct: 65 LTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMG-DVIAMALGGTALVFFCCSAY 123 Query: 133 ATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQV 192 +++D S + L AG++V+++ +ANIFLQLPAL L IS V I I S ILF+ + Sbjct: 124 VLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNI 183 Query: 193 INGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 I+GGETNYI AT+++Y+ +YN+FV+LLSILG +RD Sbjct: 184 IHGGETNYIRATVSLYVSLYNIFVSLLSILGF--ASRD 219 >ZyccA [R] COG0670 Integral membrane protein, interacts with FtsH EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 127/218 (58%), Gaps = 9/218 (4%) Query: 13 NTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFY 72 T L+ ++VLRNTY+LL+L++ + + A L L P G ++ + +G + Sbjct: 11 RTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLML------PSPGLILTLVGMYGLMF 64 Query: 73 AIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATV 132 K N G+ FT F+G +L ++ L G +I A GGTAL+F + Sbjct: 65 LTYKMANKPTGIISAFAFTGFLGYILGPILNTYLSAGMG-DVIAMALGGTALVFFCCSAY 123 Query: 133 ATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQV 192 +++D S + L AG++V+++ +ANIFLQLPAL L IS V I I S ILF+ + Sbjct: 124 VLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNI 183 Query: 193 INGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 I+GGETNYI AT+++Y+ +YN+FV+LLSILG +RD Sbjct: 184 IHGGETNYIRATVSLYVSLYNIFVSLLSILGF--ASRD 219 >ECs1054 [R] COG0670 Integral membrane protein, interacts with FtsH Ecs Escherichia coli O157:H7 Length = 219 Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 127/218 (58%), Gaps = 9/218 (4%) Query: 13 NTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFY 72 T L+ ++VLRNTY+LL+L++ + + A L L P G ++ + +G + Sbjct: 11 RTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLML------PSPGLILTLVGMYGLMF 64 Query: 73 AIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATV 132 K N G+ FT F+G +L ++ L G +I A GGTAL+F + Sbjct: 65 LTYKMANKPTGIISAFAFTGFLGYILGPILNTYLSAGMG-DVIAMALGGTALVFFCCSAY 123 Query: 133 ATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQV 192 +++D S + L AG++V+++ +ANIFLQLPAL L IS V I I S ILF+ + Sbjct: 124 VLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNI 183 Query: 193 INGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 I+GGETNYI AT+++Y+ +YN+FV+LLSILG +RD Sbjct: 184 IHGGETNYIRATVSLYVSLYNIFVSLLSILGF--ASRD 219 >VC1358 [R] COG0670 Integral membrane protein, interacts with FtsH Vch Vibrio cholerae Length = 223 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 129/212 (60%), Gaps = 5/212 (2%) Query: 17 LARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFYAIEK 76 L N+VL+NTY+LL+++++ + + A + + +S P++ V+ +A F+ + K Sbjct: 16 LETNKVLKNTYFLLSMTLVTSAIAAMATMAIGIS-----PIVALVMQLAAIGILFFVMPK 70 Query: 77 TKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATVATVS 136 NS G+ FT MG L ++ + NG +I A G T ++F ++ S Sbjct: 71 AINSSSGLVWTFVFTGLMGGALGPMLNFYAAMPNGPIVIAQALGLTGMVFLGLSAYTITS 130 Query: 137 KRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQVINGG 196 K+DFS M +LFAG++++IVA+L NIF+ L IS V+ +FS +ILFD +++ G Sbjct: 131 KKDFSFMRNFLFAGLIIVIVAALINIFVGSTVAHLAISSVSALVFSGFILFDTSRIVRGE 190 Query: 197 ETNYISATLAIYLDVYNVFVNLLSILGIVGGN 228 ETNYISAT+++YL++ N+F +LLSILGI+ N Sbjct: 191 ETNYISATISMYLNILNLFTSLLSILGIMNNN 222