BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0052.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1626 [KL] COG1199 Rad3-related DNA helicases Rso Ralstonia so...   203   1e-52
VC1990 [KL] COG1199 Rad3-related DNA helicases Vch Vibrio cholerae    140   2e-33
HI0387 [KL] COG1199 Rad3-related DNA helicases Hin Haemophilus i...   136   2e-32
PM0710 [KL] COG1199 Rad3-related DNA helicases Pmu Pasteurella m...   132   4e-31
STM1821 [KL] COG1199 Rad3-related DNA helicases Sty Salmonella t...   124   1e-28

>RSc1626 [KL] COG1199 Rad3-related DNA helicases Rso Ralstonia solanacearum
          Length = 713

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 113/143 (79%)

Query: 12  PQGIHDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKT 71
           P  +H AE+  LF   G L   + SYRPR +Q  MA+A+A AI    +LI EAGTGTGKT
Sbjct: 27  PTDLHHAELATLFADDGTLAQGIESYRPRTSQLTMAQAVANAIEAADSLIVEAGTGTGKT 86

Query: 72  FAYLVPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHL 131
           +AYLVPA+LWGGKVI+STGTKNLQDQL+LRDIPTVRKAL+APVSVALLKGR+NYVCH+HL
Sbjct: 87  YAYLVPAMLWGGKVILSTGTKNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHL 146

Query: 132 ERTLQNGRMTSRDSALYXRVARR 154
           ERT QNGR++SR  A + R   R
Sbjct: 147 ERTSQNGRLSSRQDAAWLREINR 169


>VC1990 [KL] COG1199 Rad3-related DNA helicases Vch Vibrio cholerae
          Length = 646

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/134 (52%), Positives = 90/134 (67%)

Query: 20  VERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKTFAYLVPAL 79
           +E+ F   G LG  +  ++PR AQ +MAKA+A AIA QS L+ EAGTGTGKTFAYLVPAL
Sbjct: 2   IEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPAL 61

Query: 80  LWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHLERTLQNGR 139
           L G KVI+STG+KNLQ+QL+ RD+P +  AL     VALLKGR+NY+C   L R +    
Sbjct: 62  LSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESH 121

Query: 140 MTSRDSALYXRVAR 153
               D  L  ++ +
Sbjct: 122 TPESDPTLLTQLVK 135


>HI0387 [KL] COG1199 Rad3-related DNA helicases Hin Haemophilus influenzae
          Length = 640

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 88/123 (71%)

Query: 16  HDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKTFAYL 75
           ++ ++  +F   G L   +  +RPR  Q EMA A+ +AI  +S+L+ EAGTGTGKTFAYL
Sbjct: 3   YENQIANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKSSLVIEAGTGTGKTFAYL 62

Query: 76  VPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHLERTL 135
            PAL++G K I+STG+KNLQDQL+ RD+P ++KAL+    +ALLKGR+NY+C   L++ +
Sbjct: 63  APALVFGKKTIISTGSKNLQDQLFNRDLPAIKKALNFTGKIALLKGRANYLCLERLDQVI 122

Query: 136 QNG 138
             G
Sbjct: 123 AQG 125


>PM0710 [KL] COG1199 Rad3-related DNA helicases Pmu Pasteurella multocida
          Length = 647

 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 85/125 (68%)

Query: 19  EVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKTFAYLVPA 78
           ++ ++F   G L   +  +RPR  Q EMA A+A AI  +  L+ EAGTGTGKTFAYL PA
Sbjct: 11  QIIKVFSEQGALSQSIAGFRPRAEQREMATAVASAIQDKQALVVEAGTGTGKTFAYLAPA 70

Query: 79  LLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHLERTLQNG 138
           LL   K IVSTG+KNLQDQL+ RD+P ++KAL+    +ALLKGR+NY+C   L++ +  G
Sbjct: 71  LLAKKKTIVSTGSKNLQDQLFKRDLPAIKKALNYSGKIALLKGRANYLCLERLDQVIAQG 130

Query: 139 RMTSR 143
            +  R
Sbjct: 131 VLGDR 135


>STM1821 [KL] COG1199 Rad3-related DNA helicases Sty Salmonella typhimurium
           LT2
          Length = 636

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 76/110 (69%)

Query: 24  FGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKTFAYLVPALLWGG 83
           F A G L   +  ++PR  Q +MA A+ +AI     L+ EAGTGTGKT+AYL PAL  G 
Sbjct: 5   FAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTGKTYAYLAPALRAGK 64

Query: 84  KVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHLER 133
           KVI+STG+K LQDQLY RD+PTV KAL+     ALLKGRSNY+C   LE+
Sbjct: 65  KVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALLKGRSNYLCLERLEQ 114