BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0047.p         (270 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1272 [R] COG1485 Predicted ATPase Rso Ralstonia solanacearum       291   1e-78
NMB1306 [R] COG1485 Predicted ATPase Nme Neisseria meningitidis ...   186   5e-47
NMA1520 [R] COG1485 Predicted ATPase NmA Neisseria meningitidis ...   186   5e-47
VC0568 [R] COG1485 Predicted ATPase Vch Vibrio cholerae               172   5e-43
PA4438 [R] COG1485 Predicted ATPase Pae Pseudomonas aeruginosa        172   1e-42

>RSc1272 [R] COG1485 Predicted ATPase Rso Ralstonia solanacearum
          Length = 365

 Score =  291 bits (744), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 160/180 (88%)

Query: 1   MDVREFYDHALSERGFKSDEAQQRAIDRLQRAYEEWVAFKAQRSSSFKRLINRPDVPRGV 60
           M+V+E Y   L  RG++ DEAQQRA+DRLQ  Y+EWVA+KA+RSS+ ++L+ RP++PRGV
Sbjct: 1   MNVQETYLKELKARGYQPDEAQQRAVDRLQLCYDEWVAYKARRSSALRKLLVRPELPRGV 60

Query: 61  YMWGGVGRGKSFLMDSFYSVVPVVRKTRVHFHEFMRDVHRQLDELKGIANPLDDVAKRIA 120
           YMWGGVGRGKSFLMD+FYS VPVVRKTR+HFHEFMR+VHRQL+EL+G A+PLD++A+RIA
Sbjct: 61  YMWGGVGRGKSFLMDAFYSCVPVVRKTRLHFHEFMREVHRQLEELRGRADPLDELARRIA 120

Query: 121 KKYRLICFDEFHVSDIADAMILYNLLSGLFDNGVSFVMTSNYKPDTLYPDGLHRDRMLPT 180
           K+YRLICFDEFHVSD+ADAMIL+ LL  LF NGV FVMTSNY+PD LYPDGLHRDR+LP 
Sbjct: 121 KRYRLICFDEFHVSDVADAMILHRLLDQLFANGVQFVMTSNYRPDLLYPDGLHRDRVLPA 180


>NMB1306 [R] COG1485 Predicted ATPase Nme Neisseria meningitidis MC58
          Length = 383

 Score =  186 bits (472), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 115/175 (65%)

Query: 6   FYDHALSERGFKSDEAQQRAIDRLQRAYEEWVAFKAQRSSSFKRLINRPDVPRGVYMWGG 65
           +Y  A     F  D+AQ  AI+ L R + E + FK +R+    R +  P VP+G+Y +GG
Sbjct: 21  WYQAASQLPNFIRDDAQAAAIEHLDRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGG 80

Query: 66  VGRGKSFLMDSFYSVVPVVRKTRVHFHEFMRDVHRQLDELKGIANPLDDVAKRIAKKYRL 125
           VGRGKSFLMD+F+  +P  RK RVHFH FM ++H++L  LK  +NPL  VA  IAK+ R+
Sbjct: 81  VGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRV 140

Query: 126 ICFDEFHVSDIADAMILYNLLSGLFDNGVSFVMTSNYKPDTLYPDGLHRDRMLPT 180
           +CFDEFHVSDIADAMIL  LL  L + GV  V TSNY P  LYP G +R   LPT
Sbjct: 141 LCFDEFHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPT 195


>NMA1520 [R] COG1485 Predicted ATPase NmA Neisseria meningitidis Z2491
          Length = 383

 Score =  186 bits (472), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 115/175 (65%)

Query: 6   FYDHALSERGFKSDEAQQRAIDRLQRAYEEWVAFKAQRSSSFKRLINRPDVPRGVYMWGG 65
           +Y  A     F  D+AQ  AI+ L R + E + FK +R+    R +  P VP+G+Y +GG
Sbjct: 21  WYQAASQLPNFIRDDAQAAAIEHLDRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGG 80

Query: 66  VGRGKSFLMDSFYSVVPVVRKTRVHFHEFMRDVHRQLDELKGIANPLDDVAKRIAKKYRL 125
           VGRGKSFLMD+F+  +P  RK RVHFH FM ++H++L  LK  +NPL  VA  IAK+ R+
Sbjct: 81  VGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRV 140

Query: 126 ICFDEFHVSDIADAMILYNLLSGLFDNGVSFVMTSNYKPDTLYPDGLHRDRMLPT 180
           +CFDEFHVSDIADAMIL  LL  L + GV  V TSNY P  LYP G +R   LPT
Sbjct: 141 LCFDEFHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPT 195


>VC0568 [R] COG1485 Predicted ATPase Vch Vibrio cholerae
          Length = 367

 Score =  172 bits (437), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 88/186 (47%), Positives = 116/186 (62%), Gaps = 7/186 (3%)

Query: 1   MDVREFYDHALSERGFKSDEAQQRAIDRLQRAYEEWVAFKAQ---RSSSFKRLI-NRPDV 56
           M  ++ Y+  L    F SDEAQ RA+D L   Y +W+ +  Q   R S +++LI  +P V
Sbjct: 1   MTPKQRYEKDLQRTDFYSDEAQARAVDALDNLYHQWLNYLNQPVVRPSVWQKLIGKKPTV 60

Query: 57  ---PRGVYMWGGVGRGKSFLMDSFYSVVPVVRKTRVHFHEFMRDVHRQLDELKGIANPLD 113
              P+G+YMWGGVGRGK++LMD+F+  +P  +K RVHFH FM  VH +L  L  +++PL+
Sbjct: 61  TQPPQGLYMWGGVGRGKTYLMDTFFEALPTEKKLRVHFHRFMYRVHDELRTLSDVSDPLE 120

Query: 114 DVAKRIAKKYRLICFDEFHVSDIADAMILYNLLSGLFDNGVSFVMTSNYKPDTLYPDGLH 173
            VA R   +  +ICFDEF VSDI DAMIL  L   LF  G+  V TSN  P  LY +GL 
Sbjct: 121 IVADRFCAEANIICFDEFFVSDITDAMILGTLFEALFRRGIVLVATSNIAPKDLYRNGLQ 180

Query: 174 RDRMLP 179
           R R LP
Sbjct: 181 RARFLP 186


>PA4438 [R] COG1485 Predicted ATPase Pae Pseudomonas aeruginosa
          Length = 364

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 1   MDVREFYDHALSERGFKSDEAQQRAIDRLQRAYEEWVAFKAQRSSSFKRLINRPD--VPR 58
           M   E Y   L    F  D AQ  A+  LQR Y++ VA    +   F +L+ R      +
Sbjct: 1   MTPLERYQADLQRPDFFHDAAQANAVKHLQRLYDDLVAADHAKPGLFGKLLGRKSGGPVK 60

Query: 59  GVYMWGGVGRGKSFLMDSFYSVVPVVRKTRVHFHEFMRDVHRQLDELKGIANPLDDVAKR 118
           G+Y WGGVGRGK++L+D+F+  +P  +K R HFH FM+ VH +L  LKG  NPL  + KR
Sbjct: 61  GLYFWGGVGRGKTYLVDTFFESLPFEQKVRTHFHRFMKRVHEELKTLKGEKNPLTIIGKR 120

Query: 119 IAKKYRLICFDEFHVSDIADAMILYNLLSGLFDNGVSFVMTSNYKPDTLYPDGLHRDRML 178
            A + R+ICFDEF VSDI DAMIL  LL  LF NGVS V TSN  PD LY DGL R R L
Sbjct: 121 FADEARVICFDEFFVSDITDAMILATLLEELFKNGVSLVATSNIVPDGLYKDGLQRARFL 180

Query: 179 PT 180
           P 
Sbjct: 181 PA 182