BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0046.p         (71 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1271 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase comple...   105   2e-23
NMB0957 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase comple...   100   1e-21
NMA1151 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase comple...    99   2e-21
RP460 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,...    96   2e-20
SPAC1002.09c [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase c...    95   4e-20

>RSc1271 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes Rso Ralstonia solanacearum
          Length = 478

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 59/71 (83%)

Query: 1   MVKFLADGKTDEILGVHIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEA 60
            VK +AD KTDEILGVH+V   AS+LI+EAVVAMEF+A+AEDI RICH HPS+SE  +EA
Sbjct: 408 FVKVIADAKTDEILGVHVVAANASDLIAEAVVAMEFKAAAEDIGRICHPHPSMSEVMREA 467

Query: 61  ALAVDKRALNF 71
           ALAVDKR LN 
Sbjct: 468 ALAVDKRQLNM 478


>NMB0957 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes Nme Neisseria meningitidis MC58
          Length = 477

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%)

Query: 2   VKFLADGKTDEILGVHIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEAA 61
           VK LAD KTD ILGVH++GP+ SEL++E V A+EF AS+EDIARI HAHP+LSE   EAA
Sbjct: 408 VKVLADAKTDRILGVHMIGPVVSELVTEGVTALEFFASSEDIARIIHAHPTLSEVVHEAA 467

Query: 62  LAVDKRAL 69
           LA DKRAL
Sbjct: 468 LAADKRAL 475


>NMA1151 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes NmA Neisseria meningitidis Z2491
          Length = 477

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%)

Query: 2   VKFLADGKTDEILGVHIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEAA 61
           VK LAD KTD ILGVH++GP+ SEL++E V A+EF AS+EDIARI HAHP+LSE   EAA
Sbjct: 408 VKVLADAKTDRILGVHMIGPVVSELLTEGVTALEFFASSEDIARIIHAHPTLSEVVHEAA 467

Query: 62  LAVDKRAL 69
           LA DKRAL
Sbjct: 468 LAADKRAL 475


>RP460 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes Rpr Rickettsia prowazekii
          Length = 453

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/70 (67%), Positives = 54/70 (77%)

Query: 1   MVKFLADGKTDEILGVHIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEA 60
           MVK LAD KTD +LG HI+G  A  LI+E +  MEF AS+EDIAR CHAHP+LSEA KEA
Sbjct: 383 MVKILADSKTDRVLGAHIIGSDAGTLIAELIAYMEFGASSEDIARTCHAHPTLSEAIKEA 442

Query: 61  ALAVDKRALN 70
           AL VDKR +N
Sbjct: 443 ALNVDKRTIN 452


>SPAC1002.09c [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes Spo Schizosaccharomyces pombe
          Length = 511

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 54/63 (85%)

Query: 1   MVKFLADGKTDEILGVHIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEA 60
           +VK + D +TD +LGVH++GPMA ELI EA +A+E+ ASAED+AR+CHAHP+LSEATKEA
Sbjct: 440 LVKVIVDAETDRLLGVHMIGPMAGELIGEATLALEYGASAEDVARVCHAHPTLSEATKEA 499

Query: 61  ALA 63
            +A
Sbjct: 500 MMA 502