BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0034.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0623_2 [H] COG2082 Precorrin isomerase Rso Ralstonia solanace...   234   6e-62
MJ0930 [H] COG2082 Precorrin isomerase Mja Methanococcus jannaschii    97   1e-20
Ta0654 [H] COG2082 Precorrin isomerase Tac Thermoplasma acidophilum    92   3e-19
CAC1376 [H] COG2082 Precorrin isomerase Cac Clostridium acetobut...    91   9e-19
MA4258 [H] COG2082 Precorrin isomerase Mac Methanosarcina acetiv...    90   2e-18

>RSp0623_2 [H] COG2082 Precorrin isomerase Rso Ralstonia solanacearum
          Length = 265

 Score =  234 bits (597), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 130/149 (87%)

Query: 1   VTDVTMVQTGLKRALVEQLGVETWCGVHDRETHLLAQAQGITRSAAGVRRAWEKFGNDII 60
           V DVTMVQTGLKRA+++QLGV+TWCGVHD ET LLA+A GITRSAAG+RRAW++FGND++
Sbjct: 115 VADVTMVQTGLKRAVLDQLGVQTWCGVHDEETRLLAEAHGITRSAAGIRRAWQRFGNDVV 174

Query: 61  LAIGDAPTAIVETTRLIREHGWRPQLVIGLPVGFVGTRESKDELRRCLQVPRITNSGTRG 120
           +AIGDAPTAIVE  RL+RE GWRPQLV+GLPVGFVGTRESK+ LRR +QVPRITN GTRG
Sbjct: 175 VAIGDAPTAIVELVRLVREQGWRPQLVVGLPVGFVGTRESKEALRRLMQVPRITNRGTRG 234

Query: 121 GSPWAATVVNALMIDAIGQVIAAQEAELQ 149
           GSPWAA+ VNALMI AI QV    ++  Q
Sbjct: 235 GSPWAASAVNALMIAAIDQVYRQNQSLPQ 263


>MJ0930 [H] COG2082 Precorrin isomerase Mja Methanococcus jannaschii
          Length = 210

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 83/133 (62%), Gaps = 9/133 (6%)

Query: 1   VTDVTMVQTGLKRALVEQLGVETWCGVHDRETHLLAQAQGITRSAAGVRRAWEKFGNDII 60
           + DV M++ G++   V        C ++  + + +A+ +GITR+ A +R A +   +D I
Sbjct: 79  IVDVNMIKAGIRYNKV-------HCFINHPDVYEVAKKEGITRAVASMRLAKD-LIDDGI 130

Query: 61  LAIGDAPTAIVETTRLIREHGWRPQLVIGLPVGFVGTRESKDELRRCLQVPRITNSGTRG 120
           + IG++PTA+ E  RL++E   +P+L++G+PVGFV   ESK+ LR  + VP I+  G +G
Sbjct: 131 VVIGNSPTALFEVIRLVKEENIKPKLIVGVPVGFVQASESKEALRE-VNVPSISTIGPKG 189

Query: 121 GSPWAATVVNALM 133
           G+P A  ++N ++
Sbjct: 190 GTPVAVAIINGII 202


>Ta0654 [H] COG2082 Precorrin isomerase Tac Thermoplasma acidophilum
          Length = 207

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 82/133 (61%), Gaps = 5/133 (3%)

Query: 1   VTDVTMVQTGL-KRALVEQLGVETWCGVHDRETHLLAQAQGITRSAAGVRRAWEKFGNDI 59
           + D  MV+ G+  R ++E+  V   C ++D  +  +A   GITRSAAG+R A +   N +
Sbjct: 74  ICDSEMVRAGIYSRPVLERNRV--VCYLNDVRSKEMADVNGITRSAAGIRIAMQDHRNSV 131

Query: 60  ILAIGDAPTAIVETTRLIREHGWRPQLVIGLPVGFVGTRESKDELRRCLQVPRITNSGTR 119
           I+ IG+APTA++E  R+I E+GW    ++G+PVGF+   ++K+ L     +  I+  G R
Sbjct: 132 IV-IGNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGLVSS-HIEYISVEGHR 189

Query: 120 GGSPWAATVVNAL 132
           GGSP AA++VN  
Sbjct: 190 GGSPIAASIVNGF 202


>CAC1376 [H] COG2082 Precorrin isomerase Cac Clostridium acetobutylicum
          Length = 205

 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 3/131 (2%)

Query: 3   DVTMVQTGLKRALVEQLGVETWCGVHDRETHLLAQAQGITRSAAGVRRAWEKFGNDIILA 62
           D  M+  G+ + ++  L  +    V D E   +A+ +GITRS AG+ +A  + G +  L 
Sbjct: 75  DTNMITAGISKKMLNALNCKVISYVRDEEIAAIAKEKGITRSMAGIEKAVSE-GIEFFL- 132

Query: 63  IGDAPTAIVETTRLIREHGWRPQLVIGLPVGFVGTRESKDELRRCLQVPRITNSGTRGGS 122
            G+APTA+ +   LI E    P+ V+  PVGFVG  +SK++  + L VP IT  G +GGS
Sbjct: 133 FGNAPTALYKLKELIEEKKAAPKFVVAAPVGFVGAAQSKEDFEK-LPVPMITVRGRKGGS 191

Query: 123 PWAATVVNALM 133
                +VNAL+
Sbjct: 192 TVTTAIVNALL 202


>MA4258 [H] COG2082 Precorrin isomerase Mac Methanosarcina acetivorans
           str.C2A
          Length = 240

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 6/132 (4%)

Query: 3   DVTMVQTGLKRALVEQLGVETWCGVHDRETHLLAQAQGITRSAAGVRRAWEKFGNDIILA 62
           D+ MV+ G+ +        E  C + +     +A   GITR++AG   A +K    II A
Sbjct: 106 DINMVKAGITKV---GHSSEVICVLDEDPNAEIANRYGITRTSAGYLAAKDKLDGSII-A 161

Query: 63  IGDAPTAIVETTRLIREHGWRPQLVIGLPVGFVGTRESKDELRRC-LQVPRITNSGTRGG 121
           IG+AP+A++   +LI E G RP L+IGLPVGFV   ES++ +R   + +P I+  GTRGG
Sbjct: 162 IGNAPSALIMVCKLI-EKGVRPALIIGLPVGFVNAAESREMVRNLKIPIPSISCVGTRGG 220

Query: 122 SPWAATVVNALM 133
           +P A   VN L+
Sbjct: 221 TPMAVACVNELV 232