BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0006.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0924_1 [R] COG3217 Uncharacterized Fe-S protein Vch Vibrio ch...    72   4e-13
PA3022 [R] COG3217 Uncharacterized Fe-S protein Pae Pseudomonas ...    71   7e-13
ECs1031_1 [R] COG3217 Uncharacterized Fe-S protein Ecs Escherich...    67   7e-12
Z1297_1 [R] COG3217 Uncharacterized Fe-S protein EcZ Escherichia...    67   7e-12
ycbX_1 [R] COG3217 Uncharacterized Fe-S protein Eco Escherichia ...    67   9e-12

>VCA0924_1 [R] COG3217 Uncharacterized Fe-S protein Vch Vibrio cholerae
          Length = 337

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 16/112 (14%)

Query: 1   VGEASLQDLNRRLQKKGAPAL-PMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRL 59
           + +ASL +LNRR     +P    MD+FR NLV+SG E + ED    +  G    EV    
Sbjct: 208 ISQASLDELNRR-----SPEFHSMDQFRTNLVVSGTEPFAEDSWKRIRIG----EVEFEA 258

Query: 60  VKPCARCPVPGIDQQTGLRDADWP-DEPLDTMAVYRANERVGGGLTFGQNAI 110
           VKPC RC +  ++ + G   A  P  EPL T++ +RANER  GG+ FGQN +
Sbjct: 259 VKPCERCILTTVEVKKG---AFRPTKEPLRTLSQFRANER--GGVFFGQNLV 305


>PA3022 [R] COG3217 Uncharacterized Fe-S protein Pae Pseudomonas aeruginosa
          Length = 268

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 14/118 (11%)

Query: 1   VGEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLV 60
           +G+ASL DL++R+   G P L M RFRPNLV+ G  A+ ED    +  G     V   + 
Sbjct: 155 IGQASLDDLSQRV---GRP-LEMLRFRPNLVVEGSAAFAEDGWKRIRIG----SVEFVVA 206

Query: 61  KPCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAIVVQGWGNL 118
           KPC+RC +  +D  TG R+ D   EPL T+  YR  +   G + FGQN I + G G+L
Sbjct: 207 KPCSRCILTTLDPATGERNED--REPLTTLKTYREKD---GAVLFGQNLIAL-GQGSL 258


>ECs1031_1 [R] COG3217 Uncharacterized Fe-S protein Ecs Escherichia coli
           O157:H7
          Length = 267

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 11/109 (10%)

Query: 2   GEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLVK 61
            EASL+DL    Q++   ++ M++FRPNLV+SG  A+EED    +  G    +VV  +VK
Sbjct: 151 NEASLRDL----QQRCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIG----DVVFDVVK 202

Query: 62  PCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAI 110
           PC+RC    +  + G +      EPL T+  +R  +   G + FGQN I
Sbjct: 203 PCSRCIFTTVSPEKGQKHP--AGEPLKTLQSFRTAQD-NGDVDFGQNLI 248


>Z1297_1 [R] COG3217 Uncharacterized Fe-S protein EcZ Escherichia coli
           O157:H7 EDL933
          Length = 273

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 11/109 (10%)

Query: 2   GEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLVK 61
            EASL+DL    Q++   ++ M++FRPNLV+SG  A+EED    +  G    +VV  +VK
Sbjct: 151 NEASLRDL----QQRCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIG----DVVFDVVK 202

Query: 62  PCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAI 110
           PC+RC    +  + G +      EPL T+  +R  +   G + FGQN I
Sbjct: 203 PCSRCIFTTVSPEKGQKHP--AGEPLKTLQSFRTAQD-NGDVDFGQNLI 248


>ycbX_1 [R] COG3217 Uncharacterized Fe-S protein Eco Escherichia coli K12
          Length = 273

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 11/109 (10%)

Query: 2   GEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLVK 61
            EASL+DL    Q++   ++ M++FRPNLV+SG  A+EED    +  G    +VV  +VK
Sbjct: 151 NEASLRDL----QQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIG----DVVFDVVK 202

Query: 62  PCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAI 110
           PC+RC    +  + G +      EPL T+  +R  +   G + FGQN I
Sbjct: 203 PCSRCIFTTVSPEKGQKHP--AGEPLKTLQSFRTAQD-NGDVDFGQNLI 248