BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0159.p         (118 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1598 [M] COG0845 Membrane-fusion protein Rso Ralstonia solana...    75   4e-14

>RSp1598 [M] COG0845 Membrane-fusion protein Rso Ralstonia solanacearum
          Length = 421

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 6/96 (6%)

Query: 6   HSQLGIHPLDPGEAGELLKRQQIVRRTRLIVIVVLVLLAVGAARTVISRVFNARELQAGT 65
           H  + + P++P      + R + +RR R ++IVV VLLA+GA RT++SR  NA  L+   
Sbjct: 19  HHVVTVDPIEP------VDRSRAMRRARWVLIVVAVLLALGAVRTLVSRYDNAHALERQM 72

Query: 66  TERAKQYVKTAIAKSSDATQTLSLPGTLQGYVQSPI 101
             +A +YV T   + +   + L+LPGTLQG+V+SPI
Sbjct: 73  ASQATRYVNTVAPRPAAGNRELTLPGTLQGFVESPI 108