BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0156.p (470 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 500 e-141 PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 307 4e-83 RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 300 5e-81 RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 234 2e-61 PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 209 2e-53 >RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 483 Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/464 (54%), Positives = 350/464 (75%), Gaps = 3/464 (0%) Query: 2 TAVAVAAT--LAGCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKL 59 TA+A + T L GC++ P Y +P +D+P WQ +APWR PAD+ KGPWW+RF D +L Sbjct: 9 TALAASLTTLLTGCSLAPPYARPAMDVPAHWQTEAPWRAAQPADDAPKGPWWQRFNDPQL 68 Query: 60 NALQQQAIDGNQTLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYN 119 + L +QA+ NQ+L +A + L QA+A VA AG+ PQV ST +RLR + +RPL++Y+ Sbjct: 69 DRLMEQALHENQSLKVAVSNLEQAQALTRVARAGLLPQVTASTSGARLRTSADRPLSSYS 128 Query: 120 SPNFATVQNDFALGLNVNYEVDLAGRVQRNVXARASSQQSAAD-FENTRLLLSADLAGNY 178 SP +TVQNDF + +V+YE DL GRV+ N+ A+S++ AA EN RLLL+A +A + Sbjct: 129 SPTMSTVQNDFVVRADVSYEADLFGRVRGNIANAAASEEQAAANLENVRLLLAAQVATTW 188 Query: 179 FNLRELDVELDVLSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRK 238 ++LRE D E+DV+ + +ALQRKAL+ SRH G SGLD+AQQQAL+D+T TQ ++L+K Sbjct: 189 YSLRETDAEIDVVQQGLALQRKALDFVASRHQDGVASGLDLAQQQALVDSTATQAELLQK 248 Query: 239 SRAQYQHAIATLVGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAAN 298 R QY+HA+ATL+GTPAP F +AP + PP +P+ +PSD++ERRPD+A+AER AAAN Sbjct: 249 QRTQYEHALATLIGTPAPAFHIAPAPLAGQPPVIPVALPSDVIERRPDVAAAERGAAAAN 308 Query: 299 AQIGVAKAAFYPSIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDF 358 A +GVA+AAF+PSIML G +SR++ LF+APS++WS G +AQT+FD GR A VDF Sbjct: 309 ASVGVARAAFFPSIMLNGGAGWESRDLALLFSAPSLLWSFGTQIAQTVFDAGRTRARVDF 368 Query: 359 AKGGYAASVASYRRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEG 418 A GY ++A+YR+ VL A+QEVEDG++G+ ALDRA QA+A++ SAR+V D+A++RYEG Sbjct: 369 ANAGYQGAIANYRQAVLGALQEVEDGLSGLQALDRAAAQARASVESARKVYDIASARYEG 428 Query: 419 GVSTYLDVISAQQSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 G++T LDVI+AQQSLLN++R A Q+LGQ++ TSVFL+KA GGDW Sbjct: 429 GLATSLDVIAAQQSLLNNQRTAVQILGQQLTTSVFLVKAAGGDW 472 >PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 498 Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 264/465 (56%), Gaps = 7/465 (1%) Query: 12 GCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKLNALQQQAIDGNQ 71 GCA+GPDY++PD+ +P ++ WR+ P D +G WWE +GD LN LQ NQ Sbjct: 18 GCAIGPDYQRPDLAVPAEFKEAEGWRRAEPRDVFQRGAWWELYGDQTLNDLQMHLERSNQ 77 Query: 72 TLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLT------NYNSPNFAT 125 TLA + A+ QA A A A +P + + +R G +S Sbjct: 78 TLAQSVAQFRQAEALVRGARAAFFPSITGNVGKTRSGQGGGDSTVLLPGGSTVSSGGSGA 137 Query: 126 VQNDFALGLNVNYEVDLAGRVQRNVXA-RASSQQSAADFENTRLLLSADLAGNYFNLREL 184 + ++ L+V++EVDL G+++R + A +AS SAAD RL + LA NY LR + Sbjct: 138 ISTSYSTNLSVSWEVDLWGKLRRQLEANQASLHASAADLAAVRLSQQSQLAQNYLQLRVM 197 Query: 185 DVELDVLSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRAQYQ 244 D ++ +L+ ++ ++L++A +++ G + DVAQ + L +T Q L+ RAQ + Sbjct: 198 DEQIRLLNDTVTAYERSLKVAENKYRAGIVTRADVAQARTQLKSTQAQAIDLKYQRAQLE 257 Query: 245 HAIATLVGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQIGVA 304 HAIA LVG P F+L P P +P VPS LLERRPDIASAER + +ANAQIGVA Sbjct: 258 HAIAVLVGLPPAQFNLPPVASVPKLPDLPAVVPSQLLERRPDIASAERKVISANAQIGVA 317 Query: 305 KAAFYPSIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDFAKGGYA 364 KAA++P + L+ + G S ++ + P+ WS+G A T+FDGG + + VD A+ Y Sbjct: 318 KAAYFPDLTLSAAGGYRSGSLSNWISTPNRFWSIGPQFAMTLFDGGLIGSQVDQAEATYD 377 Query: 365 ASVASYRRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEGGVSTYL 424 +VA+YR+ VL +EVED + ++ LD + A+ SAR L LA ++Y+ G Y Sbjct: 378 QTVATYRQTVLDGFREVEDYLVQLSVLDEESGVQREALESAREALRLAENQYKAGTVDYT 437 Query: 425 DVISAQQSLLNSERQAAQLLGQRMLTSVFLIKALGGDWPDAQVAR 469 DV++ Q + L++ER LLG R+ SV LI A+GG W A + R Sbjct: 438 DVVTNQATALSNERTVLTLLGSRLTASVQLIAAMGGGWDSADIER 482 >RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 300 bits (768), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 183/465 (39%), Positives = 271/465 (58%), Gaps = 16/465 (3%) Query: 10 LAGCAVGPDYRKPDVDMPVTWQLDA-PWRQGTPADEQAKGPWWERFGDAKLNALQQQAID 68 + CAVGPDY++P D+P ++ A W+ GTP+D +G WWE FGDA+LNAL++Q Sbjct: 26 MTACAVGPDYKRPSADVPQQYKETAGDWKVGTPSDAITRGKWWEIFGDAQLNALEEQVAA 85 Query: 69 GNQTLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYN---SPNFAT 125 NQ + +A A+ QA+A A A +P + S SR R R TN + S + Sbjct: 86 ANQNILVAEAQYRQAQALVQSARAQFFPTISASASASRSRSV--RTTTNADGSLSTGSPS 143 Query: 126 VQNDFALGLNVNYEVDLAGRVQRNVXA-RASSQQSAADFENTRLLLSADLAGNYFNLREL 184 + N +L L+ ++E+DL GR++R V + +AS++ SA D + L A LA +YF LR Sbjct: 144 ITNTQSLTLDASWELDLWGRIRRTVESNKASAEASAGDLASALLSAQATLAQDYFQLRVT 203 Query: 185 DVELDVLSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRAQYQ 244 D + VL R++A + L+L +++ +G DV Q L T + +RAQ + Sbjct: 204 DTQKAVLRRTVADYERFLQLTQNQYAVGVAQRSDVLTAQTQLKQTQALLLDAEVTRAQLE 263 Query: 245 HAIATLVGTPAPLFSLAP-------ELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAA 297 HAIA L+G FSLAP EL P+ P +PL +PS +LERRPDIA+AER +A A Sbjct: 264 HAIAVLIGKSPSAFSLAPVSAATAQELPPL--PDIPLEIPSTVLERRPDIAAAERRVAQA 321 Query: 298 NAQIGVAKAAFYPSIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVD 357 NA IGVAKAA++P++ L S G+ + + L PS +WS+G +LA T+F+GG ++A V+ Sbjct: 322 NANIGVAKAAYFPTLTLGASAGLSANTLSRLATLPSRIWSIGPTLAATLFEGGALNAAVN 381 Query: 358 FAKGGYAASVASYRRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYE 417 A Y A+V +YR+ VL A Q+VED + + + + A+ SA+ L +RY Sbjct: 382 KAGAAYDAAVGTYRQTVLGAFQDVEDNLAALRWQAQEFDVQNDAVQSAQEAAQLDLNRYR 441 Query: 418 GGVSTYLDVISAQQSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 G ++L+VI+AQ + +ER L G+R +V L+KALGG W Sbjct: 442 AGTISFLEVITAQATAYTAERTLLTLQGKRYSAAVLLVKALGGGW 486 >RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 182/467 (38%), Positives = 263/467 (56%), Gaps = 23/467 (4%) Query: 17 PDYRKPDVDMPVTWQ-----LDAP--------WRQGTPADEQAKGPWWERFGDAKLNALQ 63 P Y KPDV P ++ DAP W+ P+ G WW+ F DA L++L+ Sbjct: 35 PTYEKPDVGTPTAFKEAAQGADAPLAAGEQGKWKTAEPS-MPTDGAWWKLFNDATLDSLE 93 Query: 64 QQAIDGNQTLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYNSPNF 123 QA + + TLA AAAR++QARA A ++P++ +R R + +P Sbjct: 94 AQAGEASPTLAAAAARVSQARAIVQSNRAALFPELDAGFGPTRQRASAASAGLPVGAP-- 151 Query: 124 ATVQNDFALGLNVNYEVDLAGRVQRNV-XARASSQQSAADFENTRLLLSADLAGNYFNLR 182 Q + V+YE DL GRV+ +V A A +++ A + RL L AD+A YF+LR Sbjct: 152 VQPQTYWRAQTTVSYEADLFGRVRNSVNAADADAERVEALYRAARLSLQADVAQTYFSLR 211 Query: 183 ELDVELDVLSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLT-QVDVLRKSRA 241 LD E +L+R++ + +AL+L R G LDVA+ A L T + ++DV R+ RA Sbjct: 212 TLDAEEALLARTVVGREEALKLVQRRFSTGDIGELDVARADAELATARSDRLDVARR-RA 270 Query: 242 QYQHAIATLVGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQI 301 +HA+ATL+G F+L + + VP G+PS LLERRPD+A+AERAMAAANA+I Sbjct: 271 LLEHALATLLGKAPSGFTLGADPLQAANVRVPPGLPSALLERRPDVAAAERAMAAANARI 330 Query: 302 GVAKAAFYPSIMLAPSYGVDSRNIDTLFNAPSVVWSL----GVSLAQTIFDGGRVSANVD 357 GVA+AAF+P + L +G +S +I L S W L G +L+ IFDGG SA V Sbjct: 331 GVARAAFFPQLQLTGGFGFESHDIGDLLKWSSRTWLLGPLVGTALSLPIFDGGARSAGVK 390 Query: 358 FAKGGYAASVASYRRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYE 417 A+ Y +VA+YR VL A +EVED ++ + L A+ ++ R L+ +RY Sbjct: 391 QARAAYEENVANYREAVLVAFREVEDNLSDLRLLADQSKVQDDAVRASTRAAQLSRTRYN 450 Query: 418 GGVSTYLDVISAQQSLLNSERQAAQLLGQRMLTSVFLIKALGGDWPD 464 G YLDVI A++++L+++R A QL G R+ +V L+KALGG W D Sbjct: 451 AGSVNYLDVIDAERNMLSTQRVAVQLAGGRVNATVGLVKALGGGWGD 497 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 235/469 (50%), Gaps = 28/469 (5%) Query: 10 LAGCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAK---GPWWERFGDAKLNALQQQA 66 L C++GPD+ +PD P W L A G P+ A WW F DA+LNAL Q+ Sbjct: 14 LGACSLGPDFTRPDRPAPGEWSLQAA--AGNPSHLAAAPLAAQWWTLFDDAQLNALLQRV 71 Query: 67 IDGNQTLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRI--------AGNRPLTNY 118 N L AAARL Q+RA P V S R R +G NY Sbjct: 72 QRANLDLRSAAARLQQSRAIRRSLGGDALPSVDASGNYQRQRTTSAGLFDPSGKAGKGNY 131 Query: 119 NSPNFATVQNDFAL-GLNVNYEVDLAGRVQRNVXA-RASSQQSAADFENTRLLLSADLAG 176 N AL G + ++E+D GRV+R + A A+ + S + + ++ + A+ A Sbjct: 132 N----------HALAGFDASWELDFWGRVRRELEAADATVEASENELRDVQVSVLAEAAR 181 Query: 177 NYFNLRELDVELDVLSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVL 236 +Y LR ++ ++ R++LEL +R G + L+VAQ A + + ++ + Sbjct: 182 DYIQLRGEQNRAAIIRDNLETARRSLELTRTRLANGVATDLEVAQALAQVASMEARLPEV 241 Query: 237 RKSRAQYQHAIATLVG-TPAPLFS-LAP-ELVPMTPPAVPLGVPSDLLERRPDIASAERA 293 K++A +A+ LVG +P L + L P +P P +VP+G+PS+L +RRPDI AE Sbjct: 242 EKNQAHLVNALGYLVGASPGSLLAELGPARAIPRPPGSVPVGLPSELAQRRPDIRRAEAR 301 Query: 294 MAAANAQIGVAKAAFYPSIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVS 353 + AA A IGVAKA FYP I L ++G +S + +L + +++G + + IF+GGR+ Sbjct: 302 LHAATASIGVAKADFYPRITLNGNFGFESLQLSSLGDWDHRQFAIGPAFSLPIFEGGRLR 361 Query: 354 ANVDFAKGGYAASVASYRRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLAN 413 ++ + + Y+R VL A QEV+D + AA R + A+ RR L A Sbjct: 362 GRLELREAQQQEAAIDYQRTVLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSAR 421 Query: 414 SRYEGGVSTYLDVISAQQSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 +Y G +L V+ +Q+ LL+++ Q LT V L KALGG W Sbjct: 422 EQYRAGAVDFLSVLDSQRQLLDNQEQQVASDEAVSLTLVNLYKALGGGW 470