BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0151.p (202 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 182 3e-46 VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae 170 2e-42 mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 102 8e-22 BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella mel... 91 1e-18 mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 80 3e-15 >RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 207 Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%) Query: 1 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 60 MRKK+EE+RQ+IID A +F E+GFD+ASM++I+AR G SKATLYNYFSSKEE+F ++M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 120 A + FA L S + DTL +F YL+ IL P +A+RRL +RS+LG Sbjct: 61 GTAADEIREAFAQL---KSSGPVADTLVVFGEHYLNAILRPSTLAIRRLAICEGDRSNLG 117 Query: 121 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 180 +YE+GPK GW +++EF++ AM+ G L++ D + A L EAE E +LGV + Sbjct: 118 RAFYEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECVELCLLGVPLDI 177 Query: 181 PPAKIKASVERSLEAFFRIYG 201 P +I V R+++ F YG Sbjct: 178 SPGRIAEGVARAVDVFMAAYG 198 >VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 131/202 (64%), Gaps = 3/202 (1%) Query: 1 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 60 MR KSEE+RQAI+++A + F + GF++ SM+ I+ LGGSKATLYNYFSSKEEIF VM+ Sbjct: 1 MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVME 60 Query: 61 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 120 A Q F L D + +++ L F +L+ +L+ + +++ R+ + A+RS +G Sbjct: 61 SSATEQIALSFLSL---DHNRELKPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIG 117 Query: 121 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 180 +YENGPKRGW +S ++ ++ G L+E DPW+ A+ F+ L+ A++ E LG I Sbjct: 118 RHFYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLSAQYFEPFSLGAIEKP 177 Query: 181 PPAKIKASVERSLEAFFRIYGV 202 +++KA+ +R++EAF +Y Sbjct: 178 TSSELKATTQRAVEAFLCLYAA 199 >mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 244 Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 5/197 (2%) Query: 8 RRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMKQQAGMQF 67 +R IID A +F E GF+ ASM +I+ G SK T+Y YF++KEE+F +++++ G F Sbjct: 33 KRSQIIDGARRVFIEKGFEAASMNDITREAGVSKGTIYVYFANKEELFEALIEEERGTIF 92 Query: 68 ESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAER-SDLGCMYYEN 126 ++++ +L D + D+R TL F I S VI +R + ++R D+G +YE Sbjct: 93 KNMYDML---DRADDLRQTLVKFGKVLSMKITSARVIQAQRTVIGASDRIPDMGARFYER 149 Query: 127 GPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSMPPA-KI 185 GPKRG + +F+ A++RG L+ D L A QF L A I T P +I Sbjct: 150 GPKRGHDKVVKFLNAAIERGLLKIDDVDLAAYQFTELCLAGLFRQCIFAYRTKAPSQEEI 209 Query: 186 KASVERSLEAFFRIYGV 202 V ++ F + YG Sbjct: 210 DHIVRSGVDMFLKNYGT 226 >BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella melitensis Length = 247 Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 5/196 (2%) Query: 8 RRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMKQQAGMQF 67 +R I++ A +F +GFD ASM +I+ G SK T+Y YF+SKE++F+ + + F Sbjct: 53 KRSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSKEDLFVALCEHYRQTLF 112 Query: 68 ESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERS-DLGCMYYEN 126 S L + G S+ R L F LI S I +R++ +ER +L +YE Sbjct: 113 SSFIGQL--EKGFSN-RQELIDFGVALTTLITSSIAIRAQRIVVGVSERKPELAARFYER 169 Query: 127 GPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSMPPAK-I 185 GPKR ++++ ++ +D G L + D TA Q L A R+ G + P + I Sbjct: 170 GPKRSHAIMAQSLQAMIDAGVLEQHDVTRTAYQLSDLFFAGLYRPRLFGALAEAPSEQAI 229 Query: 186 KASVERSLEAFFRIYG 201 + +VE +++ FFR YG Sbjct: 230 RDNVESAVDFFFRAYG 245 >mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 210 Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 4 KSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVM---K 60 +S + + II A F G+D SM EI+ + G SK T+Y +F+ KE +F +V+ Sbjct: 8 RSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTA 67 Query: 61 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAER-SDL 119 Q ES+ +L E + M L+ A + + +++ E++ +RRL+ NA+R L Sbjct: 68 SQVNDIIESVTTLLSE---AIFMEGGLQQLARRLIAVLMDEELLKLRRLIIANADRMPQL 124 Query: 120 GCMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQ-FRVLVEAEWAEGRILGVIT 178 G +YE G +R + ++ +RG ++ DP+L A F +L+ E G Sbjct: 125 GRAWYEKGFERMLASTASCFQKLTNRGLIQTGDPYLAASHLFGMLLWIPMNEAMFTGS-N 183 Query: 179 SMPPAKIKASVERSLEAFFRIYGV 202 A+++ + S+EAF +YGV Sbjct: 184 RRSKAELERHADASVEAFLAVYGV 207