BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0146.p (410 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4367_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 191 2e-48 PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 186 9e-47 RSc0588_5 [T] COG2200 FOG Rso Ralstonia solanacearum 184 2e-46 RSc1545 [T] COG5001 Predicted signal transduction protein contai... 184 4e-46 BH2971_2 [T] COG2200 FOG Bha Bacillus halodurans 182 1e-45 >PA4367_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 267 Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/253 (41%), Positives = 151/253 (59%), Gaps = 1/253 (0%) Query: 157 RRLNIEQSILMALRENELRLVYQPKVT-QDGEIVGLEALIRWRSPTLGDVSPAEFIPVAE 215 RR +E+ + AL+ +EL LVYQP+V +D +VG+EAL+RW+ P G V P FIP+AE Sbjct: 1 RRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIPLAE 60 Query: 216 TSGAIHFITAFVVDKVCAYIRQTLDSERRCLPIAINLSAIDIVRADLLDLVNASCQKYGV 275 +G+I I +V+D+ C +R+ D L +A+NLS + + L +V+ Q Y + Sbjct: 61 QNGSIFSIGEWVLDQACRQLREWHDQGFDDLRMAVNLSTVQLHHNALPRVVSNLLQVYRL 120 Query: 276 SSDHLEFEITETGLVGNENLAISHLEALNAKGYGITIDDFGTGYSSLQKLSRFPTKSIKI 335 + LE E+TETGL+ + + A HL +L G I IDDFGTGYSSL L P IKI Sbjct: 121 PARSLELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLDKIKI 180 Query: 336 DQSFVAQIGISEKSELIIRAVVSLAKILSCTTVAEGVETLVQEKFLKAIGCQFFQGFYYY 395 D+SFV + E I+RA++ L K L +AEGVET QE ++ A GC QG+ Y Sbjct: 181 DKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCNEGQGYLYS 240 Query: 396 PPMEFQQVNQLLK 408 P+ +++ Q LK Sbjct: 241 KPLPARELTQYLK 253 >PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 254 Score = 186 bits (472), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 147/249 (59%), Gaps = 1/249 (0%) Query: 156 RRRLNIEQSILMALRENELRLVYQPKV-TQDGEIVGLEALIRWRSPTLGDVSPAEFIPVA 214 + +L + + AL +L L YQPKV +G ++G+EAL+RW P G ++P +F+P+A Sbjct: 1 QEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQFLPLA 60 Query: 215 ETSGAIHFITAFVVDKVCAYIRQTLDSERRCLPIAINLSAIDIVRADLLDLVNASCQKYG 274 E +G I I +V+D+ C +R LD IA+NLSA+ A L+D V + ++ Sbjct: 61 EKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHAGLVDSVRNALLRHS 120 Query: 275 VSSDHLEFEITETGLVGNENLAISHLEALNAKGYGITIDDFGTGYSSLQKLSRFPTKSIK 334 + HL E+TE+ + + + ++ LE L+A G GI+IDDFGTGYSSL L R P +K Sbjct: 121 LEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELK 180 Query: 335 IDQSFVAQIGISEKSELIIRAVVSLAKILSCTTVAEGVETLVQEKFLKAIGCQFFQGFYY 394 ID+ F+ ++ I+ A+V+L + L+ VAEGVET Q++FL +GC QGF Sbjct: 181 IDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSLQGFLL 240 Query: 395 YPPMEFQQV 403 PM +Q+ Sbjct: 241 GRPMPAEQL 249 >RSc0588_5 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 260 Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 146/246 (59%), Gaps = 8/246 (3%) Query: 157 RRLNIEQSILMALRENELRLVYQPKV-TQDGEIVGLEALIRWRSPTLGDVSPAEFIPVAE 215 RR +EQ + AL EL L +QP V IVG E L+RW S LG+VSPAEFIPVAE Sbjct: 1 RRFQLEQHLRRALSAQELSLRFQPIVDAASMGIVGAEVLLRWHSAELGEVSPAEFIPVAE 60 Query: 216 TSGAIHFITAFVVDKVCAYIRQTLDSERRCLP---IAINLSAIDIVRADLLDLVNASCQK 272 +G I I +V+++ C RQ R C P IA+NLS A L+ +++ + Sbjct: 61 DAGLIIAIGEWVLEQAC---RQAAHWRRTCAPDFFIAVNLSPRQFGDA-LVPMLSRCLAE 116 Query: 273 YGVSSDHLEFEITETGLVGNENLAISHLEALNAKGYGITIDDFGTGYSSLQKLSRFPTKS 332 G+ + LE EITE L+ + + L+AL A G I+IDDFGTGYSSL L RFP + Sbjct: 117 SGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDDFGTGYSSLSYLQRFPIDN 176 Query: 333 IKIDQSFVAQIGISEKSELIIRAVVSLAKILSCTTVAEGVETLVQEKFLKAIGCQFFQGF 392 +K+D+SFV+ I S +I RAVV++A L T AEGVETL Q +FL+A GC QGF Sbjct: 177 LKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVETLAQAEFLQAAGCDKLQGF 236 Query: 393 YYYPPM 398 + PM Sbjct: 237 LFGAPM 242 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 189/381 (49%), Gaps = 7/381 (1%) Query: 20 LVVIRLDSIKYANDAHGSAAGDALIVAFADALRRLLP-DGSLIARLRSVVFSFTIETSHA 78 L+ I LD K ND G AGDAL+ A LR + G IARL F+ + A Sbjct: 373 LLYIDLDGFKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDA 432 Query: 79 SRDAIPQIEHIRRSLPEELLVGGQRHPVQVSMAIAFSRPGETSGDELIQRGKLALDSARR 138 R A I L Q + S+ IA + + L+ R +AL +A+ Sbjct: 433 DRAATLATALIEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKA 492 Query: 139 SGTQDITVFDDEAAALIRRRLNIEQSILMAL-RENELRLVYQPKV-TQDGEIVGLEALIR 196 +G +F + I+ R +E + AL ++ L + YQP V G++ EAL+R Sbjct: 493 AGKGLARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVR 552 Query: 197 WRSPTLGDVSPAEFIPVAETSGAIHFITAFVVDKVCAYIRQTLDSERRCLPIAINLSAID 256 W G V P EF+P+AE SG I + FV+ + C + D R +A+N+S + Sbjct: 553 WHHAERGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWEDGAR----VAVNVSPMQ 608 Query: 257 IVRADLLDLVNASCQKYGVSSDHLEFEITETGLVGNENLAISHLEALNAKGYGITIDDFG 316 + +A L V+A+ G++ D LE E+TET L+ NE + L L G + +DDFG Sbjct: 609 LGKATLAQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFG 668 Query: 317 TGYSSLQKLSRFPTKSIKIDQSFVAQIGISEKSELIIRAVVSLAKILSCTTVAEGVETLV 376 TGYSSL L FP IKID+SFV + S +++RA+ L + L TTVAEGVET Sbjct: 669 TGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQA 728 Query: 377 QEKFLKAIGCQFFQGFYYYPP 397 + ++ GC QG+YY P Sbjct: 729 HVRGIREAGCTEAQGYYYGRP 749 >BH2971_2 [T] COG2200 FOG Bha Bacillus halodurans Length = 251 Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 146/248 (58%), Gaps = 2/248 (0%) Query: 161 IEQSILMALRENELRLVYQPKV-TQDGEIVGLEALIRWRSPTLGDVSPAEFIPVAETSGA 219 +E + A+ EL L +QP T GE G E L+RW P LG + P FIPVAE G Sbjct: 3 LENDLRRAVENQELELYFQPIFETTTGEHCGEEVLVRWNHPALGVLGPNFFIPVAEEIGL 62 Query: 220 IHFITAFVVDKVCAYIRQTLDSERRCLPIAINLSAIDIVRADLLDLVNASCQKYGVSSDH 279 I + +V+D+ C ++ E +P+++NLS ++ D++D++ S KYG+ Sbjct: 63 IGVVGKWVLDEACKQKALLIEKEASSVPMSVNLSLRQFLQPDIVDMILDSLNKYGLDPSL 122 Query: 280 LEFEITETGLVGNENLAISHLEALNAKGYGITIDDFGTGYSSLQKLSRFPTKSIKIDQSF 339 LE E+TE + + N A+ L+ L A+G +++DDFGTGYSSLQ +S+ P + +KID+SF Sbjct: 123 LEVEVTER-ITIDMNRAMKVLQKLRAQGIRVSLDDFGTGYSSLQYISQLPIQKLKIDKSF 181 Query: 340 VAQIGISEKSELIIRAVVSLAKILSCTTVAEGVETLVQEKFLKAIGCQFFQGFYYYPPME 399 +A+IG++ + E II ++ L L T VAEGVET Q FLK C QG+Y+ P+ Sbjct: 182 IAEIGVNSQVEAIISMIIHLGHELDLTVVAEGVETEKQLSFLKEKKCDTVQGYYHAKPLT 241 Query: 400 FQQVNQLL 407 F + + L Sbjct: 242 FSEFKKYL 249