BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0142.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0535 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   204   7e-53
VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae      124   1e-28
PM0567 [K] COG0583 Transcriptional regulator Pmu Pasteurella mul...   118   7e-27
YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis     116   3e-26
STM2982 [K] COG0583 Transcriptional regulator Sty Salmonella typ...   112   4e-25

>RSp0535 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 303

 Score =  204 bits (520), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 125/155 (80%), Gaps = 2/155 (1%)

Query: 1   MRISPLPPLPSLIAFEAAMRHSSFTRAAAELHLTQSAISRQIAQLERFLGKKLFIREPRA 60
           MRISPLPPL  LIAFE+A RHSSFTRAAAEL+LTQSA+SRQI QLE FLG++LF+REPRA
Sbjct: 1   MRISPLPPLQCLIAFESAARHSSFTRAAAELNLTQSAVSRQIGQLEDFLGRQLFLREPRA 60

Query: 61  LRLTVSGQRYAEEVQRLLVGCAEVTEDIMKRKGHSELTVACSSGVAVLWLTPRLARFRAL 120
           L+LTV+GQRYA+ V+  L  C++ T D+MKR G  +L +ACSSGVA LWL PR+  F A 
Sbjct: 61  LQLTVAGQRYADRVRSQLEACSDATFDVMKRYGDLDLALACSSGVATLWLAPRIGHFYAS 120

Query: 121 QPECHLRLIVNDSLAALSETDFDMAIYFLRD--GP 153
            P  +LR+IV DSLA+L+ ++FD+ +Y+LRD  GP
Sbjct: 121 HPNINLRIIVRDSLASLAPSEFDVGLYYLRDACGP 155


>VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae
          Length = 306

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 90/153 (58%), Gaps = 1/153 (0%)

Query: 6   LPPLPSLIAFEAAMRHSSFTRAAAELHLTQSAISRQIAQLERFLGKKLFIREPRALRLTV 65
           LPPL SL  FEAA RH SFTRAA EL +TQ+A+S QI  LE FLG KLF R  R+L LT 
Sbjct: 5   LPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTE 64

Query: 66  SGQRYAEEVQRLLVGCAEVTEDIMKRKGHSELTVACSSGVAVLWLTPRLARFRALQPECH 125
            GQ Y  +++ +    AE T+ +++R     LT++     A+ WL PRLA F   +P+  
Sbjct: 65  EGQSYFLDIKDIFSSLAEATDKLLERSEKGALTISLPPSFAIQWLVPRLADFNQQEPDID 124

Query: 126 LRLIVNDSLAALSETDFDMAIYFLRDGPPSGLR 158
           +R+   D        D D+AIY+ R   P GLR
Sbjct: 125 VRIKAVDMDEGSLTDDVDVAIYYGRGSWP-GLR 156


>PM0567 [K] COG0583 Transcriptional regulator Pmu Pasteurella multocida
          Length = 293

 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 84/143 (58%)

Query: 6   LPPLPSLIAFEAAMRHSSFTRAAAELHLTQSAISRQIAQLERFLGKKLFIREPRALRLTV 65
           LPPL SL AFE+A RH SFT+AA EL +TQ+AIS QI  LE FLG  LF R+ R+L LT 
Sbjct: 5   LPPLNSLKAFESAARHLSFTKAAEELFVTQAAISHQIKLLEDFLGITLFKRKNRSLELTE 64

Query: 66  SGQRYAEEVQRLLVGCAEVTEDIMKRKGHSELTVACSSGVAVLWLTPRLARFRALQPECH 125
            G+ Y  +V ++L    E TE ++ +K    LT++      + WL P L+ F    PE  
Sbjct: 65  LGKAYFTDVNKILRRLVEATEKLLAQKNDKHLTISVPQTFGMQWLVPHLSEFNQRYPEIE 124

Query: 126 LRLIVNDSLAALSETDFDMAIYF 148
           +RL   D    +   D D+AIY+
Sbjct: 125 VRLKGVDQDEGVLNKDIDIAIYY 147


>YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis
          Length = 305

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 1/153 (0%)

Query: 6   LPPLPSLIAFEAAMRHSSFTRAAAELHLTQSAISRQIAQLERFLGKKLFIREPRALRLTV 65
           LPPL +L AF+AA RH SFT+AA EL +TQ+A+S QI  LE FLG KLF R  R+L LT 
Sbjct: 5   LPPLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTE 64

Query: 66  SGQRYAEEVQRLLVGCAEVTEDIMKRKGHSELTVACSSGVAVLWLTPRLARFRALQPECH 125
            GQ Y  +++ +     E T  +  R     LTV+     A+ WL PRL+ F A  P   
Sbjct: 65  EGQSYYLDIKEIFTSINEATRKLQARSAKGALTVSLPPSFAIQWLVPRLSGFNAAYPGID 124

Query: 126 LRLIVNDSLAALSETDFDMAIYFLRDGPPSGLR 158
           +R+   D        D D+AI++ R G  SGLR
Sbjct: 125 VRIQAVDREEDKLADDVDVAIFYGR-GNWSGLR 156


>STM2982 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium
           LT2
          Length = 305

 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 6   LPPLPSLIAFEAAMRHSSFTRAAAELHLTQSAISRQIAQLERFLGKKLFIREPRALRLTV 65
           LPPL +L  F+AA RH SFTRAA EL +TQ+A+S QI  LE FLG KLF R  R+L LT 
Sbjct: 5   LPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTE 64

Query: 66  SGQRYAEEVQRLLVGCAEVTEDIMKRKGHSELTVACSSGVAVLWLTPRLARFRALQPECH 125
            GQ Y  +++ +     E T  +  R     LTV+     A+ WL PRL+ F +  P   
Sbjct: 65  EGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLPPSFAIQWLVPRLSSFNSAYPGID 124

Query: 126 LRLIVNDSLAALSETDFDMAIYFLRDGPPSGLR 158
           +R+   D        D D+AI++ R   P GLR
Sbjct: 125 VRIQAVDRQEDKLADDVDVAIFYGRGNWP-GLR 156